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Search results for python pacbio

17 search results found

Sniffles ⭐ 479

Structural variation caller using third generation sequencing

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Technology agnostic long read analysis pipeline for transcriptomes

Isoquant ⭐ 98

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

Long Reads Annotation pipeline

Transcriptclean ⭐ 57

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

Long-reads Gap-free Chromosome-scale Assembler

ClairS - a deep-learning method for long-read somatic small variant calling

An all-in-one genome-centric metagenomics workflow using long reads

Lrbinner ⭐ 22

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

Predict plasmids from uncorrected long read data

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Isotools ⭐ 15

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

Coronavirus (SARS-Cov-2) sequencing analysis

Improving long-read barcode-variant mapping using multiple sequence alignment.

Quality control plotting for long reads

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