Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Nextflow | 2,447 | 16 | 2 months ago | 250 | November 24, 2023 | 336 | apache-2.0 | Groovy | ||
A DSL for data-driven computational pipelines | ||||||||||
Drake | 1,332 | 15 | 1 | 5 months ago | 47 | November 06, 2023 | gpl-3.0 | R | ||
An R-focused pipeline toolkit for reproducibility and high-performance computing | ||||||||||
Targets | 855 | 8 days ago | other | R | ||||||
Function-oriented Make-like declarative workflows for R | ||||||||||
Sarek | 299 | 2 months ago | 180 | mit | Nextflow | |||||
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
Sunbeam | 157 | 2 months ago | 14 | HTML | ||||||
A robust, extensible metagenomics pipeline | ||||||||||
Steppy | 136 | 5 | 5 years ago | 16 | November 23, 2018 | 16 | mit | Python | ||
Lightweight, Python library for fast and reproducible experimentation :microscope: | ||||||||||
Seq2science | 132 | 4 months ago | 18 | mit | Python | |||||
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data. | ||||||||||
Sarek | 126 | 4 years ago | n,ull | mit | Nextflow | |||||
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing | ||||||||||
Targets Tutorial | 90 | 4 months ago | other | R | ||||||
Short course on the targets R package | ||||||||||
Bacannot | 85 | 4 months ago | 10 | gpl-3.0 | Nextflow | |||||
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app. |