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Search results for ngs nextflow
nextflow
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ngs
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19 search results found
Callings Nf
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76
GATK RNA-Seq Variant Calling in Nextflow
Needlestack
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39
Multi-sample somatic variant caller
Iarc Nf
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35
List of IARC bioinformatics nextflow pipelines
Grape Nf
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35
An automated RNA-seq pipeline using Nextflow
Circrna
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32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Ngs Preprocess
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23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Rnaseq Nf
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20
RNAseq analysis pipeline
Gatk4_best_practice
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18
GATK4 Best Practice Nextflow Pipeline
Alignment Nf
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18
Whole Exome/Whole Genome Sequencing alignment pipeline
Hgtseq
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17
A pipeline to investigate horizontal gene transfer from NGS data
Crisprseq
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17
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Covigator Ngs Pipeline
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15
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
Grandeur
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13
UPHL's Reference Free Pipeline
Chip Nf
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13
An automated ChIP-seq pipeline using Nextfow
Bioinformatics
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10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Monsda
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10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
Nextflow_pipelines
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8
The set of NGS processing pipelines used at Babraham
Ngs580 Nf
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7
Target exome sequencing analysis for NYU NGS580 gene panel
Ipsa Nf
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5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
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Nextflow Nf Core (75)
Variants Ngs (73)
1-19 of 19 search results
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