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Search results for metagenomics microbiome analysis

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6 search results found

Tools Microbiome Analysis ⭐ 95

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

Microbiomebestpracticereview ⭐ 45

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

Microbiomeutilities ⭐ 29

The is mostly a wrapper tool using phyloseq and microbiome R packages.

Microbiomer ⭐ 17

A comprehensive R package for microbiome analysis.

Metagenomics calibration R package

Genome On Diet ⭐ 11

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

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