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Search results for microbiome analysis
microbiome-analysis
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26 search results found
Microbiome
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257
microbiome R package
Cobratoolbox
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232
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Microbiotaprocess
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150
🦠 A comprehensive R package for deep mining microbiome
Qiita
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118
Qiita - A multi-omics databasing effort
Tools Microbiome Analysis
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95
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Microviz
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80
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
Microbiomebestpracticereview
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45
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Microbiomeexplorer
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44
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
Microbiomeutilities
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29
The is mostly a wrapper tool using phyloseq and microbiome R packages.
Miceco
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28
Various functions for analysis of microbial community data
Tmap
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26
topological data analysis of population-scale microbiomes
Microbiomestat
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18
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Microbiomer
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17
A comprehensive R package for microbiome analysis.
Metacal
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16
Metagenomics calibration R package
Imap
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13
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
Paramedic
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12
Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
Phylotoast
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12
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Genome On Diet
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11
Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
Curatedmetagenomicdataanalyses
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9
Analyses in R and Python Using curatedMetagenomicData
Microbiome Toolbox
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8
Early Life Microbiome Toolbox
Miaviz
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7
Microbiome Analysis Plotting and Visualization
Csmd
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7
A computational pipeline for high-resolution profiling of low abundance microbiome in clinical samples using whole genome shotgun sequencing
Microbial
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6
Do microbiome analysis with dada2 and phyloseq object
Methods
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5
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
V Xtractor
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5
Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
Tidytacos
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5
Functions to manipulate and visualize microbial community data
Related Searches
R Microbiome Analysis (22)
Bioinformatics Microbiome Analysis (10)
Python Microbiome Analysis (9)
Metagenomics Microbiome Analysis (7)
Html Microbiome Analysis (7)
Microbiome Analysis Phyloseq (6)
1-26 of 26 search results
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