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6 search results found

Microbiomebestpracticereview ⭐ 45

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

Microbiomer ⭐ 17

A comprehensive R package for microbiome analysis.

Phylotoast ⭐ 12

Tools for phylogenetic data analysis including visualization and cluster-computing support.

Genome On Diet ⭐ 11

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

A computational pipeline for high-resolution profiling of low abundance microbiome in clinical samples using whole genome shotgun sequencing

V Xtractor ⭐ 5

Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

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