Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for illumina
illumina
x
48 search results found
Fastp
⭐
1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
Clair3
⭐
191
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Genomics
⭐
154
A collection of scripts and notes related to genomics and bioinformatics
Ampliseq
⭐
141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Viral Ngs
⭐
129
Viral genomics analysis pipelines
Strobealign
⭐
114
Aligns short reads using dynamic seed size with strobemers
Viralrecon
⭐
101
Assembly and intrahost/low-frequency variant calling for viral samples
Taxprofiler
⭐
78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Xtea
⭐
70
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Wengan
⭐
57
An accurate and ultra-fast hybrid genome assembler
Fq
⭐
54
Command line utility for manipulating Illumina-generated FASTQ files.
Mpgap
⭐
51
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Sample Sheet
⭐
45
Parse Illumina sample sheets with Python
Aldy
⭐
43
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Clairs
⭐
42
ClairS - a deep-learning method for long-read somatic small variant calling
Recount
⭐
40
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Demultiplex
⭐
31
Demultiplexing pipeline for sequencing data
Atria
⭐
30
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
Awesome Sequencing Tech Papers
⭐
26
A collection of publications on comparison of high-throughput sequencing technologies.
Recount3
⭐
24
Explore and download data from the recount3 project
Checkqc
⭐
23
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Ngs Preprocess
⭐
23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Ikra
⭐
21
RNAseq pipeline centered on Salmon
Defq
⭐
20
Ultra-fast Multi-threaded FASTQ Demultiplexing
Seqmaker.jl
⭐
19
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
Clairs To
⭐
18
ClairS-TO - a deep-learning method for tumor-only somatic SNV calling
Rnaseq Pipeline
⭐
18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
S4 Clarity Lib
⭐
16
A modern Python library for BaseSpace Clarity LIMS.
Fast Sg
⭐
16
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
Mgse
⭐
16
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Human_genomics_pipeline
⭐
15
A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Rmap
⭐
15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
Varvamp
⭐
15
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Sandy
⭐
14
A straightforward and complete next-generation sequencing read simulator
Cliquesnv
⭐
13
Grandeur
⭐
13
UPHL's Reference Free Pipeline
Digestiflow Server
⭐
13
🍸 Web-based database system for flow cell management (incl. REST API)
Chimerate
⭐
12
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
Assnake
⭐
10
Snakemake based framework for NGS data analysis and management
16s Rdna V3 V4
⭐
8
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
Agaat
⭐
7
Automated Tool for Global Screening Array analysis
Methylr
⭐
6
methylR: a single shiny solution from sequencer data to pathway analysis
Slim
⭐
6
A web app for environmental DNA metabarcoding analysis
Ampligone
⭐
6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Nxf Bcl
⭐
5
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
Metalnx Msi
⭐
5
Metalnx Micro Services for iRODS
Kit4b
⭐
5
A fully integrated K-mer Informed Toolkit for Bioinformatics
Sagawe
⭐
5
⚪ ➡️ 🔍 ℹ️ A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
1-48 of 48 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.