Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for genomics ngs
genomics
x
ngs
x
59 search results found
Deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk
⭐
1,576
Official code repository for GATK versions 4 and up
Galaxy
⭐
1,211
Data intensive science for everyone.
Deeptools
⭐
644
Tools to process and analyze deep sequencing data.
Awesome Omics
⭐
536
A collection of awesome things regarding all omics.
Jvarkit
⭐
440
Java utilities for Bioinformatics
Juicer
⭐
313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Fgbio
⭐
292
Tools for working with genomic and high throughput sequencing data.
Htsjdk
⭐
271
A Java API for high-throughput sequencing data (HTS) formats.
Ngless
⭐
141
NGLess: NGS with less work
Cloud Pipeline
⭐
137
Cloud agnostic genomics analysis, scientific computation and storage platform
Viral Ngs
⭐
129
Viral genomics analysis pipelines
V Pipe
⭐
119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Reg Gen
⭐
96
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Seqfu2
⭐
96
🚀 seqfu - Sequece Fastx Utilities
Bwa Meme
⭐
92
BWA-MEME: Faster BWA-MEM2 using learned-index
Genomics
⭐
78
Scripts, utilities and programs for genomic bioinformatics.
Callings Nf
⭐
76
GATK RNA-Seq Variant Calling in Nextflow
Catch
⭐
63
A package for designing compact and comprehensive capture probe sets.
Bio Dockers
⭐
32
🐳 Bio-dockers: dockerized bioinformatic tools
Circrna
⭐
32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Oxbow
⭐
32
Read specialized NGS formats as data frames in R, Python, and more.
Mtbseq_source
⭐
32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Disq
⭐
31
A library for manipulating bioinformatics sequencing formats in Apache Spark
Mindthegap
⭐
30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
Pygtftk
⭐
30
A python package and a set of shell commands to handle GTF files
Pgcgap
⭐
29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
Bac Genomics Scripts
⭐
28
Collection of scripts for bacterial genomics
Comparative_genomics
⭐
24
Micro 612 genomics workshop
Kgwasflow
⭐
19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Rnaseq Pipeline
⭐
18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Sequenceng
⭐
18
An interactive learning resource for next-generation sequencing (NGS) techniques
Ctdnatools
⭐
17
R package to work with ctDNA sequencing data
Icallsv
⭐
16
A Framework to call Structural Variants from NGS based datasets
Mgse
⭐
16
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Covigator Ngs Pipeline
⭐
15
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
Seroba
⭐
14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
Grandeur
⭐
13
UPHL's Reference Free Pipeline
Prophage_tracer
⭐
13
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
Sting
⭐
12
Ultrafast sequence typing and gene detection from NGS raw reads
Deepvariant On Spark
⭐
11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Cgat Flow
⭐
10
cgat-flow repository
Ngsderive
⭐
10
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
Banzai Microbialgenomics Pipeline
⭐
10
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
Bioinformatics
⭐
10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Cvbio
⭐
9
Artisanal 🤣 bioinformatics tools and pipelines in Scala
Ngs17
⭐
8
Materials used during #NGSchool2017
Nanoforms
⭐
6
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
Unmasc
⭐
6
Tumor-only variant calling
Fings
⭐
6
Filters for Next Generation Sequencing
Appliedgenomeresearch
⭐
6
course about NGS data processing: genomics and transcriptomics
Banzaidb
⭐
6
BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.
2019genomicsepidemiologyworkshop
⭐
6
2019 Genomics Epidemiology Workshop at Academia Sinica
Kas Analyzer
⭐
6
New computational framework to process and analyze KAS-seq and spKAS-seq data.
Vsc_ngs_workshop
⭐
5
This is the repository of the Genomics Core High Performance Computing for Genomics workshop.
Genocraft
⭐
5
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
Gbsapp
⭐
5
Automated Pipeline for Variant/Haplotype Calling and Filtering
Recallme
⭐
5
Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer
Ipsa Nf
⭐
5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Related Searches
Bioinformatics Genomics (541)
Python Genomics (515)
Genome Genomics (297)
Python Ngs (261)
Sequencing Ngs (182)
Bioinformatics Ngs (165)
Sequencing Genomics (143)
Pipeline Ngs (143)
Pipeline Genomics (125)
Genome Ngs (115)
1-59 of 59 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.