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18 search results found

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Higlass ⭐ 300

Fast, flexible and extensible genome browser.

Hicexplorer ⭐ 197

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

A cool place to store your Hi-C

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

Coolpuppy ⭐ 66

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Mustache ⭐ 50

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

C.origami ⭐ 47

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

Chromosight ⭐ 46

Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Hicpeaks ⭐ 36

A Python implementation for BH-FDR and HiCCUPS

Instagraal ⭐ 33

Large genome reassembly based on Hi-C data, continuation of GRAAL

Pgltools ⭐ 23

Paired Genomic Loci Tool Suite

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

Hicstuff ⭐ 17

Simple library/pipeline to generate and handle Hi-C data.

Chromegcn ⭐ 16

Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification

Genomenote ⭐ 16

This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.

Hicreppy ⭐ 14

Python reimplementation of hicrep with compatibility for sparse matrices

R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes

Hicbrowser ⭐ 11

Simple web browser to visualize HiC tracks

Visual exploration of large genome interaction matrices with interactive small multiples.

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