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57 search results found

Seurat ⭐ 2,025

R toolkit for single cell genomics

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Cbioportal ⭐ 535

cBioPortal for Cancer Genomics

Pycirclize ⭐ 476

Circular visualization in Python (Circos Plot, Chord Diagram)

Higlass ⭐ 300

Fast, flexible and extensible genome browser.

Canvasxpress ⭐ 282

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Ideogram ⭐ 265

Chromosome visualization for the web

Sequenceserver ⭐ 259

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

A genome browser that shows long reads and complex variants better

Tools to work with variant call format files

Hicexplorer ⭐ 197

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Jbrowse Components ⭐ 182

Source code for JBrowse 2, a modern React-based genome browser

Pygenomeviz ⭐ 177

A genome visualization python package for comparative genomics

Gosling.js ⭐ 152

Grammar of Scalable Linked Interactive Nucleotide Graphics

Wally: Visualization of aligned sequencing reads and contigs

Ggnomics ⭐ 69

A small project to add ggplot2 extensions

Geneticsmakie.jl ⭐ 66

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Merging, Annotation, Validation, and Illustration of Structural variants

Splitthreader ⭐ 60

Explore rearrangements and copy-number amplifications in a cancer genome

Palimpsest ⭐ 56

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

Radiator ⭐ 53

RADseq Data Exploration, Manipulation and Visualization using R

Genomegtftools ⭐ 52

convert various features into a GFF-like file for use in genome browsers

Geneview ⭐ 51

Genomics data visualization in Python by using matplotlib.

Pymsaviz ⭐ 41

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Awesome Biological Visualizations ⭐ 41

A list of web-based interactive biological data visualizations.

Aniclustermap ⭐ 38

A tool for drawing ANI clustermap between all-vs-all microbial genomes

Jbrowser ⭐ 31

R interface to the JBrowse 2 Linear Genome View.

Ezancestry ⭐ 28

Easy genetic ancestry predictions in Python

Cogclassifier ⭐ 27

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Comparative_genomics ⭐ 24

Micro 612 genomics workshop

Cgview Js ⭐ 20

CGView.js creates interactive circular and linear genome maps.

Bigcomputelabs ⭐ 20

Big Compute Learning Labs

Mgcplotter ⭐ 20

Microbial Genome Circular plotting tool for comparative genomics using Circos

Javascript library for visualizing genomics data with D3.

Biocancer ⭐ 15

♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis

Genegrouper ⭐ 13

CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.

Python-based UCSC genome browser snapshot-taker and gallery-maker

Hicbrowser ⭐ 11

Simple web browser to visualize HiC tracks

Python wrapper for Circos

Visual exploration of large genome interaction matrices with interactive small multiples.

Divbrowse ⭐ 10

A web application for interactive visualization and exploratory data analysis of variant call matrices

Jp_gene_viz ⭐ 10

A collection of visualizations for genomics related information for use with Jupyter notebooks.

D3 based visualisation for comparative genomics

Oncothreads ⭐ 8

OncoThreads longitudinal cancer genomics visualization project.

Agebioportal ⭐ 7

R Shiny web application for aging-related diseases

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data

Easy-to-use web application for visualization and comparison of genomes in Genbank file

Simple interactive chromosome maps written in R

Glue Genes ⭐ 7

glue for genomics and transcriptomics

Lavalampplot ⭐ 6

instructions, python and R code for generating lava lamp plots of kmer coverage

Canvasxpress Js ⭐ 6

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

1000 Genomes Project population visualizations using dimensionality reduction

Genocraft ⭐ 5

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

firefox addon : IGV (Integrative Genomics Viewer) control through mozilla Firefox

Microbetrace ⭐ 5

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

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