Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Csvtk | 923 | 1 | 3 months ago | 83 | November 27, 2023 | 13 | mit | Go | ||
A cross-platform, efficient and practical CSV/TSV toolkit in Golang | ||||||||||
Jcvi | 650 | 1 | 1 | 4 months ago | 97 | August 30, 2023 | 41 | bsd-2-clause | Python | |
Python library to facilitate genome assembly, annotation, and comparative genomics | ||||||||||
Bioconvert | 344 | 3 | 5 months ago | 34 | July 18, 2023 | 27 | gpl-3.0 | Python | ||
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. | ||||||||||
Pronto | 212 | 23 | 27 | 7 months ago | 76 | August 17, 2023 | 32 | mit | Python | |
A Python frontend to (Open Biomedical) Ontologies. | ||||||||||
Gfatools | 181 | 6 months ago | 17 | C | ||||||
Tools for manipulating sequence graphs in the GFA and rGFA formats | ||||||||||
Edamontology | 110 | 7 months ago | 231 | cc-by-sa-4.0 | Shell | |||||
EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications. | ||||||||||
Fqtools | 105 | 4 years ago | 13 | gpl-3.0 | C | |||||
An efficient FASTQ manipulation suite | ||||||||||
Hickit | 69 | 3 years ago | 10 | C | ||||||
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C | ||||||||||
Gff3toolkit | 68 | 1 | 6 months ago | 12 | December 14, 2021 | 14 | other | Python | ||
Python programs for processing GFF3 files | ||||||||||
Hadoop Bam | 66 | 37 | 33 | 5 years ago | 17 | April 23, 2018 | 40 | mit | Java | |
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework |