Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Sigprofilermatrixgenerator | 91 | 1 | 10 | 3 months ago | 102 | October 02, 2023 | 5 | bsd-2-clause | Python | |
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. | ||||||||||
Hic2cool | 50 | 1 | 5 months ago | 29 | November 14, 2023 | 16 | mit | Python | ||
Lightweight converter between hic and cool contact matrices. | ||||||||||
Sigprofilermatrixgeneratorr | 17 | a year ago | 2 | bsd-2-clause | R | |||||
R wrapper for utilizing the SigProfilerMatrixGenerator framework | ||||||||||
Hicreppy | 14 | a year ago | 1 | gpl-3.0 | Python | |||||
Python reimplementation of hicrep with compatibility for sparse matrices | ||||||||||
Uncurl_python | 14 | 2 | 2 years ago | 12 | June 27, 2022 | mit | Jupyter Notebook | |||
UNCURL is a tool for single cell RNA-seq data analysis. | ||||||||||
Mbpls | 10 | 2 | 4 years ago | 15 | October 30, 2018 | bsd-3-clause | Python | |||
(Multiblock) Partial Least Squares Regression for Python | ||||||||||
Programming For Bioinformatics | 10 | 4 years ago | 3 | mit | Python | |||||
Rnaseq | 8 | a year ago | 1 | gpl-3.0 | Groovy | |||||
Fast RNAseq pipeline |