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Search results for mapping genome
genome
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mapping
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46 search results found
Sniffles
⭐
479
Structural variation caller using third generation sequencing
Fastani
⭐
301
Fast Whole-Genome Similarity (ANI) Estimation
Mashmap
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243
A fast approximate aligner for long DNA sequences
Chromosomemappings
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204
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
Graphmap
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137
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms113 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
Winnowmap
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131
Long read / genome alignment software
Mirdeep2
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120
Discovering known and novel miRNAs from small RNA sequencing data
Tadbit
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89
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Metamaps
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88
Long-read metagenomic analysis
Mitobim
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74
MITObim - mitochondrial baiting and iterative mapping
Hera
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74
Scrnaseqpipeline
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73
Qtl
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71
R/qtl: A QTL mapping environment
Bactmap
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45
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Pblat
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37
parallelized blat with multi-threads support
Irep
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37
scripts for estimating bacteria replication rates based on population genome copy number variation
Gem3 Mapper
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27
GEM-Mapper v3
Qtip
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23
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
Repenrich2
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22
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
Repenrich
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21
RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
Echolocator
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20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Mrsfast
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20
mrsFAST: micro-read substitution-only Fast Alignment Search Tool
Mageri
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19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
Symap
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17
Synteny Mapping and Analysis Program
Walt
⭐
15
WALT is a read mapping program for bisulfite sequencing DNA methylation studies.
Sigmap
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15
A streaming method for mapping nanopore raw signals
Biobtree
⭐
13
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes
Mmp
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12
MEM mapper prototype
Netprophet_2.0
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11
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
Sequencing_for_genetics
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11
유전학자를 위한 시퀀싱 자료 분석
Mhic
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11
Gencode Backmap
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10
Mapping of GENCODE gene annotation set files to older assembies
Bamstats
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9
A command line tool to compute mapping statistics from a BAM file
Hichap_master
⭐
9
An integrated package to process diploid Hi-C data
Taxomias
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9
an easy to use implementation of the NCBI taxonomy database for daily use
Mrcanavar
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7
micro-read Copy Number Variant Regions finder
Varathon
⭐
7
A scalable variant calling and benchmarking framework supporting both short and long reads.
Circularmapper
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6
A method to improve mappings on circular genomes, using the BWA mapper
Shrimp
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6
SHRiMP is a software package for aligning genomic reads against a target genome.
Rna Seq_mapping_workflow
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6
Pipeline for RNAseq data analysis based on reference genome
Rmta
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6
Read Mapping and Transcript Assembly
Mira
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6
MIRA sequence assembler
Isoblat
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5
use RNA transcripts to assess assembly - this program parses the output of a BLAT run of transcriptome vs. a genome. It returns 1) Total % mapped, 2) average %coverage of a mapping, and 3) number of transcripts mapping to a single contig/scaffold. It is simple to run. Just run the blat (transcripts vs. genome) and then run the script with the blat-output and your transcript-fasta-file as arguments.
Ixnos
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5
Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model
Polyacaller
⭐
5
Kvarq
⭐
5
Targeted and Mapping-Free Variant Calling in FastQ Reads of Bacterial Genomes
Related Searches
Python Genome (1,622)
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R Genome (488)
Pipeline Genome (479)
Perl Genome (453)
Assembly Genome (449)
Genome Sequencing (438)
1-46 of 46 search results
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