Ixnos
Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Sniffles | 479 | 5 months ago | 8 | July 27, 2023 | 95 | mit | Python | |||
| Structural variation caller using third generation sequencing | ||||||||||
| Fastani | 301 | 10 months ago | 51 | apache-2.0 | C++ | |||||
| Fast Whole-Genome Similarity (ANI) Estimation | ||||||||||
| Mashmap | 243 | 5 months ago | 18 | other | C++ | |||||
| A fast approximate aligner for long DNA sequences | ||||||||||
| Chromosomemappings | 204 | 2 years ago | 1 | mit | ||||||
| This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes. | ||||||||||
| Graphmap | 137 | 5 years ago | 37 | mit | C++ | |||||
| GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here: | ||||||||||
| Winnowmap | 131 | 2 years ago | 17 | other | C | |||||
| Long read / genome alignment software | ||||||||||
| Mirdeep2 | 120 | 6 months ago | 2 | gpl-3.0 | Perl | |||||
| Discovering known and novel miRNAs from small RNA sequencing data | ||||||||||
| Tadbit | 89 | 2 years ago | 58 | gpl-3.0 | Python | |||||
| TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models | ||||||||||
| Metamaps | 88 | 8 months ago | 22 | other | Perl | |||||
| Long-read metagenomic analysis | ||||||||||
| Mitobim | 74 | 6 years ago | 19 | mit | Perl | |||||
| MITObim - mitochondrial baiting and iterative mapping | ||||||||||
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