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Search results for visualization bioinformatics
bioinformatics
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visualization
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112 search results found
Dnafeaturesviewer
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500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
Pycirclize
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476
Circular visualization in Python (Circos Plot, Chord Diagram)
Awesome Cheminformatics
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473
A curated list of Cheminformatics libraries and software.
Clinker
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452
Gene cluster comparison figure generator
Anvio
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396
An analysis and visualization platform for 'omics data
Quast
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327
Genome assembly evaluation tool
Canvasxpress
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282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Sequenceserver
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259
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Ribbon
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249
A genome browser that shows long reads and complex variants better
Teachingdemos
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216
Bioinformatics related demos and tutorials using the R programming language
Hicexplorer
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197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Pycomplexheatmap
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182
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
Jbrowse Components
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182
Source code for JBrowse 2, a modern React-based genome browser
Pygenomeviz
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177
A genome visualization python package for comparative genomics
Indra
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154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Genome Spy
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150
A visualization grammar and GPU-accelerated toolkit for genomic data
Itol.toolkit
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137
Helper Functions for Interactive Tree Of Life (iTOL)
Mutscan
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127
Detect and visualize target mutations by scanning FastQ files directly
Oreilly Animal Books For Python
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123
O‘REILLY animal books for Python
Sigminer
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119
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/
Nightingale
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102
Data visualisation web components for the life sciences.
Cwl Svg
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72
A library for generating an interactive SVG visualization of CWL workflows
Startapp
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71
The START App: R Shiny Transcriptome Analysis Resource Tool
Geneticsmakie.jl
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66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Epiviz
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66
EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.
Mavis
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65
Merging, Annotation, Validation, and Illustration of Structural variants
Cirrocumulus
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63
Bring your single-cell data to life
Splitthreader
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60
Explore rearrangements and copy-number amplifications in a cancer genome
Caleydo
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57
Caleydo - Visualization for Molecular Biology
Palimpsest
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56
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Flexidot
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56
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Fastv
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56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Emperor
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52
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Geneview
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51
Genomics data visualization in Python by using matplotlib.
Tomicsvis
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50
Transcriptomics Visualization R package.
Newt
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48
A web application to visualize and edit pathway models
Fluentdna
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43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Swan_vis
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43
A Python library to visualize and analyze long-read transcriptomes
Pymsaviz
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41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Fuc
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38
Frequently used commands in bioinformatics
Aniclustermap
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38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Empress
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33
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Itolapi
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31
Python API for the Interactive Tree of Life (iTOL)
Locuszoom Standalone
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30
Create regional association plots from GWAS or meta-analysis
Orthoevolution
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28
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Cogclassifier
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27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Bdvis
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27
Biodiversity data Visualizations in R
Docs
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27
Documentation of Hiplot (ORG) visualization platform.
Phyloprofile
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26
A phylogenetic profile analysis tool
Biocircos.r
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26
Htmlwidgets binding R commands to the BioCircos.js library
Seuratv3wizard
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26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
Iroki
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25
Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.
Rnartistcore
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25
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
Biomehorizon
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24
Plot microbiome time series in parallel
Asap
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24
ASAP : Automated Single-cell Analysis Pipeline
Qurro
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23
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
Lexicon
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22
Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.
Metagenomescope
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22
Visualization tool for (meta)genome assembly graphs
Gssplayground
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21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Tagore
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21
The script presents a simple way to visualize features on human chromosome ideograms
Lore
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21
WebGL engine for (big) data visualization.
Mgcplotter
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20
Microbial Genome Circular plotting tool for comparative genomics using Circos
Cgview Js
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20
CGView.js creates interactive circular and linear genome maps.
St Speckmol
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18
🧬Streamlit Component for creating Speck molecular structures within Streamlit Web app🚀.
Correlationplus
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18
A Python package to calculate, visualize and analyze correlation maps of proteins.
Eltetrado
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17
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Microbiomer
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17
A comprehensive R package for microbiome analysis.
Phat
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17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Neuroexpresso
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16
📊 Gene expression in neuroexpresso database
Biolitmap
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16
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
Pybioviz
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14
bioinformatics visualization tools with pyviz/bokeh
Chrysalis
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13
Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
Genegrouper
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13
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Chronqc
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13
Manuscript describing ChronQC is now available online in Bioinformatics
Phylotoast
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12
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Pomashiny
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11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
Hicbrowser
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11
Simple web browser to visualize HiC tracks
Nasqar
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10
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Divbrowse
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10
A web application for interactive visualization and exploratory data analysis of variant call matrices
Enrichment_analysis
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10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
R_intro
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8
A Gentle Introduction to R, RStudio, and visualization
Deseq2shiny
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8
a web-based R shiny application that wraps DESeq2 R package
Surfstamp Public
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7
3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
Agebioportal
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7
R Shiny web application for aging-related diseases
Gemo
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7
A mosaic genome painting tool for plant genomes
Fma_finder
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7
visualization, functional module alignment
Visualizationqualitycontrol
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7
Visualization methods for omics dataset quality control
Mummer Idotplot
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7
Generate interactive dotplot from mummer4 output using plotly
Bigwig Reader
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7
Typescript library for reading BigWig and BigBed files.
Gbkviz
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7
Easy-to-use web application for visualization and comparison of genomes in Genbank file
Glue Genes
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7
glue for genomics and transcriptomics
Biopythonramachandran
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6
Covseq
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6
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
Ggmotif
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6
add DNA sequence motifs to ggplot
Hlaclustrview
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6
R package specialized in HLA typing clustering and visualization based on specific similarity metrics
Lava
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6
LAVA: Longitudinal Analysis of Viral Alleles
Afplot
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6
Plot allele frequencies in VCF files
Dea_seurat
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6
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Unity Protein Visualization
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6
Protein Visualization using Unity and C# analysis on PDB Files.
Canvasxpress Js
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6
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
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