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The Top 915 Reproducibility Open Source Projects

Categories > Science > Reproducibility
Dvc ⭐ 10,728
🦉Data Version Control | Git for Data & Models | ML Experiments Management
dependent packages 24total releases 376most recent commit 3 days agopypi dvc} Downloads
Wandb ⭐ 5,038
🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.
dependent packages 232total releases 237most recent commit 5 hours agopypi wandb} Downloads
Sacred ⭐ 3,954
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
dependent packages 25total releases 27most recent commit 5 days agopypi sacred} Downloads
Catalyst ⭐ 2,999
Accelerated deep learning R&D
dependent packages 10total releases 108most recent commit 2 months agopypi catalyst} Downloads
Lightning Hydra Template ⭐ 1,990
PyTorch Lightning + Hydra. A very user-friendly template for rapid and reproducible ML experimentation with best practices. ⚡🔥⚡
most recent commit 4 days ago
Snakemake ⭐ 1,531
This is the development home of the workflow management system Snakemake. For general information, see
dependent packages 69total releases 233most recent commit 6 hours agopypi snakemake} Downloads
Garage ⭐ 1,448
A toolkit for reproducible reinforcement learning research.
dependent packages 2total releases 21most recent commit 6 months agopypi garage} Downloads
Evalai ⭐ 1,413
☁️ 🚀 📊 📈 Evaluating state of the art in AI
most recent commit 6 days ago
Mlreef ⭐ 1,403
The collaboration workspace for Machine Learning
most recent commit a month ago
Drake ⭐ 1,321
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 43most recent commit 4 months ago
Vps Comparison ⭐ 1,316
A comparison between some VPS providers. It uses Ansible to perform a series of automated benchmark tests over the VPS servers that you specify. It allows the reproducibility of those tests by anyone that wanted to compare these results to their own. All the tests results are available in order to provide independence and transparency.
most recent commit 5 years ago
Benchmark_vae ⭐ 1,012
Unifying Generative Autoencoder implementations in Python
total releases 5most recent commit a month ago
Recsys2019_deeplearning_evaluation ⭐ 871
This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.
most recent commit 10 months ago
Gtsummary ⭐ 747
Presentation-Ready Data Summary and Analytic Result Tables
dependent packages 7total releases 24most recent commit 6 days ago
Reprex ⭐ 686
Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
dependent packages 3total releases 9most recent commit 3 months ago
Targets ⭐ 665
Function-oriented Make-like declarative workflows for R
most recent commit 5 days ago
Mach Nix ⭐ 655
Create highly reproducible python environments
most recent commit a month ago
Wdl ⭐ 609
Workflow Description Language - Specification and Implementations
total releases 20most recent commit 3 days ago
Rrtools ⭐ 581
rrtools: Tools for Writing Reproducible Research in R
most recent commit 3 months ago
Coyim ⭐ 565
coyim - a safe and secure chat client
total releases 124most recent commit 3 months ago
Mimicry ⭐ 556
[CVPR 2020 Workshop] A PyTorch GAN library that reproduces research results for popular GANs.
total releases 17most recent commit 4 months ago
Labnotebook ⭐ 528
LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.
most recent commit 5 years ago
Curl For Win ⭐ 517
Reproducible curl binaries for Windows
most recent commit 4 days ago
Data Life ⭐ 516
most recent commit 4 years ago
Ck ⭐ 502
Portable automation meta-framework to unify, describe, interconnect, manage and reuse any ad-hoc scripts, artifacts and workflows on any platform with any software and hardware in a non-intrusive way and with minimal effort. Try it using this tutorial to modularize and automate ML Systems benchmarking from the Student Cluster Competition at SC'22
dependent packages 3total releases 95most recent commit 4 days agopypi ck} Downloads
Nn Template ⭐ 472
Generic template to bootstrap your PyTorch project.
most recent commit 6 months ago
Torch Fidelity ⭐ 465
High-fidelity performance metrics for generative models in PyTorch
total releases 3most recent commit 2 months ago
Reinforcementlearning.jl ⭐ 427
A reinforcement learning package for Julia
most recent commit 3 months ago
Open Solution Home Credit ⭐ 412
Open solution to the Home Credit Default Risk challenge 🏡
most recent commit 5 months ago
Jupyterwith ⭐ 398
Declarative and reproducible Jupyter environments - powered by Nix
most recent commit 2 days ago
Dream2nix ⭐ 323
Nixify software with less effort [[email protected]]
most recent commit a day ago
Datmo ⭐ 322
Open source production model management tool for data scientists
total releases 41most recent commit 3 years ago
Uwot ⭐ 282
An R package implementing the UMAP dimensionality reduction method.
dependent packages 17total releases 8most recent commit 21 days ago
Reprozip ⭐ 264
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
dependent packages 6total releases 29most recent commit a month agopypi reprounzip} Downloads
Quantus ⭐ 259
Quantus is an eXplainable AI toolkit for responsible evaluation of neural network explanations
total releases 6most recent commit 4 days ago
Plynx ⭐ 247
PLynx is a domain agnostic platform for managing reproducible experiments and data-oriented workflows.
total releases 36most recent commit 2 days ago
Awesome Reproducible Research ⭐ 242
A curated list of reproducible research case studies, projects, tutorials, and media
most recent commit 5 days ago
Popper ⭐ 239
Container-native task automation engine.
total releases 19most recent commit a year ago
Typed Argument Parser ⭐ 225
Typed argument parser for Python
dependent packages 8total releases 19most recent commit 8 months agopypi typed-argument-parser} Downloads
Simple_rl ⭐ 224
A simple framework for experimenting with Reinforcement Learning in Python.
total releases 31most recent commit 3 months ago
Jax Flows ⭐ 222
Normalizing Flows in JAX 🌊
total releases 2most recent commit 13 days ago
Iclr_2019 ⭐ 219
ICLR Reproducibility Challenge 2019
most recent commit 4 years ago
Rstudio2019 ⭐ 206
Resources from my Rstudio::conf 2019 talk
most recent commit 4 years ago
Bingo ⭐ 196
Like `go get` but for Go tools! CI Automating versioning of Go binaries in a nested, isolated Go modules.
total releases 31most recent commit 2 months ago
Renku ⭐ 190
Renku provides a platform and tools for reproducible and collaborative data analysis.
most recent commit 2 days ago
Anaconda Project ⭐ 184
Tool for encapsulating, running, and reproducing data science projects
dependent packages 2total releases 11most recent commit 4 months ago
Rna Seq Star Deseq2 ⭐ 182
RNA-seq workflow using STAR and DESeq2
most recent commit a year ago
Bramble ⭐ 172
Purely functional build system and package manager
total releases 4most recent commit 6 months ago
Biomartr ⭐ 162
Genomic Data Retrieval with R
dependent packages 2total releases 16most recent commit 7 months ago
Liftr ⭐ 160
🐳 Containerize R Markdown documents for continuous reproducibility
most recent commit a year ago
Evidential Deep Learning ⭐ 157
Learn fast, scalable, and calibrated measures of uncertainty using neural networks!
total releases 3most recent commit a year ago
Rl Medical ⭐ 154
Deep Reinforcement Learning (DRL) agents applied to medical images
most recent commit 2 years ago
Statcheck ⭐ 151
A spellchecker for statistics
most recent commit 17 days ago
Accelerator ⭐ 150
The Accelerator is a tool for fast and reproducible processing of large amounts of data.
dependent packages 1total releases 16most recent commit 5 months agopypi accelerator} Downloads
Checkpoint ⭐ 150
Install R packages from snapshots on checkpoint-server
dependent packages 3total releases 21most recent commit 10 months ago
Bento ⭐ 148
A tool to nicely wrap-up your python softwares
total releases 7most recent commit 8 years ago
Keepkey Firmware ⭐ 140
KeepKey Device Firmware
most recent commit 2 days ago
Randomnas_release ⭐ 140
Code release for paper "Random Search and Reproducibility for NAS"
most recent commit 3 years ago
Dna Seq Gatk Variant Calling ⭐ 138
This Snakemake pipeline implements the GATK best-practices workflow
most recent commit 2 years ago
Msdnet Gcn ⭐ 137
ICLR 2018 reproducibility challenge - Multi-Scale Dense Convolutional Networks for Efficient Prediction
most recent commit 5 years ago
Datapackager ⭐ 137
An R package to enable reproducible data processing, packaging and sharing.
total releases 8most recent commit 8 months ago
Batchtools ⭐ 133
Tools for computation on batch systems
dependent packages 8total releases 15most recent commit a year ago
Make Novice ⭐ 133
Automation and Make
most recent commit 10 months ago
Steppy ⭐ 130
Lightweight, Python library for fast and reproducible experimentation 🔬
total releases 16most recent commit 4 years ago
Sisso ⭐ 129
A data-driven method combining symbolic regression and compressed sensing toward accurate & interpretable models
most recent commit 3 months ago
Example Get Started ⭐ 129
Get started DVC project
most recent commit a month ago
Hydra Zen ⭐ 128
Configurable, reproducible, and scalable Python programs, via Hydra
dependent packages 2total releases 31most recent commit 2 days agopypi hydra-zen} Downloads
Nixos Guide ⭐ 120
NixOS Guide
most recent commit 4 months ago
Dockta ⭐ 120
🐳 A Docker image builder for researchers
dependent packages 2total releases 22most recent commit 14 days agonpm @stencila/dockta} Downloads
Openxai ⭐ 115
OpenXAI : Towards a Transparent Evaluation of Model Explanations
most recent commit 4 days ago
Starters ⭐ 114
R Package 📦 for initializing projects for various R activities 🔩
most recent commit 2 years ago
Maggot ⭐ 110
A lightweight python library that helps to keep track of numerical experiments
most recent commit 2 years ago
Signac ⭐ 109
Manage large and heterogeneous data spaces on the file system.
dependent packages 3total releases 33most recent commit 3 days agopypi signac} Downloads
Enmf ⭐ 109
This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.
most recent commit a year ago
Reproducible Research ⭐ 95
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
most recent commit 2 years ago
Scalac Profiling ⭐ 94
Implementation of SCP-010.
dependent packages 1total releases 5most recent commit 9 months ago
Ezknitr ⭐ 94
Avoid the typical working directory pain when using 'knitr'
total releases 5most recent commit 2 years ago
Rubicon Ml ⭐ 93
Capture all information throughout your model's development in a reproducible way and tie results directly to the model code!
total releases 29most recent commit 2 days ago
Vistrails ⭐ 92
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
most recent commit 5 years ago
Forml ⭐ 89
ForML - A development framework and MLOps platform for the lifecycle management of data science projects
dependent packages 1total releases 9most recent commit a month agopypi forml} Downloads
Smb_git ⭐ 85
A review paper describing how git can be used to improve reproducibility in science
most recent commit 4 years ago
Continuous_analysis ⭐ 82
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
most recent commit 2 years ago
Tarchetypes ⭐ 82
Archetypes for targets and pipelines
most recent commit 5 days ago
Docker Devel Env ⭐ 80
Fast, reproducible, and portable software development environments
most recent commit a year ago
Meta Blocks ⭐ 75
A modular toolbox for meta-learning research with a focus on speed and reproducibility.
total releases 4most recent commit 2 years ago
Jama16 Retina Replication ⭐ 75
JAMA 2016; 316(22) Replication Study
most recent commit 3 years ago
Synchronicity ⭐ 74
Distributed build system providing cryptographic proofs-of-reproducibility via Byzantine Fault Tolerant (BFT) consensus
total releases 2most recent commit 2 years ago
Singularity Hpc ⭐ 74
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
total releases 43most recent commit 8 days ago
R13y.com ⭐ 72
NixOS Reproducibility Checker
most recent commit 6 months ago
Analysis Flow ⭐ 70
Data Analysis Workflows & Reproducibility Learning Resources
most recent commit 2 years ago
Dna Seq Varlociraptor ⭐ 66
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
most recent commit 3 days ago
Targets Tutorial ⭐ 66
Short course on the targets R package
most recent commit a year ago
Git Ghost ⭐ 64
Synchronize your working directory efficiently to a remote place without committing the changes.
total releases 6most recent commit 2 months ago
Postr ⭐ 63
Prepare reproducible R Markdown posters
most recent commit 4 years ago
Rebench ⭐ 62
Execute and document benchmarks reproducibly.
total releases 17most recent commit 6 days ago
Repeatr ⭐ 62
Repeatr: Reproducible, hermetic Computation. Provision containers from Content-Addressable snapshots; run using familiar containers (e.g. runc); store outputs in Content-Addressable form too! JSON API; connect your own pipelines! (Or, use github.com/polydawn/stellar for pipelines!)
most recent commit 3 years ago
Quantifying Independently Reproducible Ml ⭐ 61
most recent commit 3 years ago
Biosimspace ⭐ 60
Code and resources for the EPSRC BioSimSpace project.
most recent commit 3 days ago
Drake Examples ⭐ 58
Example workflows for the drake R package
most recent commit a year ago
Drake ⭐ 57
The user manual for the drake R package
most recent commit 2 years ago
1-100 of 915 projects
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