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The Top 371 Reproducibility Open Source Projects on Github

Categories > Science > Reproducibility
Dvc ⭐ 9,148
🦉Data Version Control | Git for Data & Models | ML Experiments Management
Sacred ⭐ 3,667
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Client ⭐ 3,650
🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.
Catalyst ⭐ 2,813
Accelerated deep learning R&D
Garage ⭐ 1,376
A toolkit for reproducible reinforcement learning research.
Mlreef ⭐ 1,343
The collaboration workspace for Machine Learning
Drake ⭐ 1,320
An R-focused pipeline toolkit for reproducibility and high-performance computing
Vps Comparison ⭐ 1,316
A comparison between some VPS providers. It uses Ansible to perform a series of automated benchmark tests over the VPS servers that you specify. It allows the reproducibility of those tests by anyone that wanted to compare these results to their own. All the tests results are available in order to provide independence and transparency.
Evalai ⭐ 1,296
☁️ 🚀 📊 📈 Evaluating state of the art in AI
Snakemake ⭐ 1,210
This is the development home of the workflow management system Snakemake. For general information, see
Lightning Hydra Template ⭐ 887
PyTorch Lightning + Hydra. A feature-rich template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡
Recsys2019_deeplearning_evaluation ⭐ 852
This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.
Reprex ⭐ 617
Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
Gtsummary ⭐ 609
Presentation-Ready Data Summary and Analytic Result Tables
Targets ⭐ 542
Function-oriented Make-like declarative workflows for R
Labnotebook ⭐ 528
LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.
Rrtools ⭐ 525
rrtools: Tools for Writing Reproducible Research in R
Mimicry ⭐ 475
[CVPR 2020 Workshop] A PyTorch GAN library that reproduces research results for popular GANs.
Wdl ⭐ 472
Workflow Description Language - Specification and Implementations
Mach Nix ⭐ 421
Create highly reproducible python environments
Open Solution Home Credit ⭐ 400
Open solution to the Home Credit Default Risk challenge 🏡
Nn Template ⭐ 350
Generic template to bootstrap your PyTorch project with PyTorch Lightning, Hydra, W&B, DVC, and Streamlit.
Datmo ⭐ 322
Open source production model management tool for data scientists
Torch Fidelity ⭐ 318
High-fidelity performance metrics for generative models in PyTorch
Jupyterwith ⭐ 307
declarative and reproducible Jupyter environments - powered by Nix
Bigscity Libcity ⭐ 279
LibCity: An Open Library for Traffic Prediction
Reprozip ⭐ 251
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Popper ⭐ 239
Container-native task automation engine.
Plynx ⭐ 221
PLynx is a domain agnostic platform for managing reproducible experiments and data-oriented workflows.
Rna Seq Star Deseq2 ⭐ 182
RNA-seq workflow using STAR and DESeq2
Awesome Reproducible Research ⭐ 180
A curated list of reproducible research case studies, projects, tutorials, and media
Anaconda Project ⭐ 173
Tool for encapsulating, running, and reproducing data science projects
Renku ⭐ 169
The Renku Project provides a platform and tools for reproducible and collaborative data analysis.
Bramble ⭐ 158
Purely functional build system and package manager
Bingo ⭐ 148
Like `go get` but for Go tools! CI Automating versioning of Go binaries in a nested, isolated Go modules.
Accelerator ⭐ 145
The Accelerator is a tool for fast and reproducible processing of large amounts of data.
Dna Seq Gatk Variant Calling ⭐ 138
This Snakemake pipeline implements the GATK best-practices workflow
Make Novice ⭐ 133
Automation and Make
Batchtools ⭐ 133
Tools for computation on batch systems
Datapackager ⭐ 131
An R package to enable reproducible data processing, packaging and sharing.
Steppy ⭐ 130
Lightweight, Python library for fast and reproducible experimentation 🔬
Reproducibility Guide ⭐ 120
project page for creating a guide to reproducible research
Starters ⭐ 114
R Package 📦 for initializing projects for various R activities 🔩
Enmf ⭐ 109
This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.
Dream2nix ⭐ 101
A generic framework for 2nix tools [[email protected]]
Rl Medical ⭐ 99
Deep Reinforcement Learning (DRL) agents applied to medical images
Dockta ⭐ 97
🐳 A Docker image builder for researchers
Reproducible Research ⭐ 95
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
Ezknitr ⭐ 94
Avoid the typical working directory pain when using 'knitr'
Vistrails ⭐ 92
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Scalac Profiling ⭐ 84
Implementation of SCP-010.
Signac ⭐ 83
Manage large and heterogeneous data spaces on the file system.
Continuous_analysis ⭐ 82
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
Docker Devel Env ⭐ 80
Fast, reproducible, and portable software development environments
Jama16 Retina Replication ⭐ 75
JAMA 2016; 316(22) Replication Study
Example Get Started ⭐ 75
Get started DVC project
Analysis Flow ⭐ 70
Data Analysis Workflows & Reproducibility Learning Resources
Targets Tutorial ⭐ 66
Short course on the targets R package
Tarchetypes ⭐ 65
Archetypes for targets and pipelines
Postr ⭐ 63
Prepare reproducible R Markdown posters
Repeatr ⭐ 62
Repeatr: Reproducible, hermetic Computation. Provision containers from Content-Addressable snapshots; run using familiar containers (e.g. runc); store outputs in Content-Addressable form too! JSON API; connect your own pipelines! (Or, use github.com/polydawn/stellar for pipelines!)
Rubicon Ml ⭐ 58
Capture all information throughout your model's development in a reproducible way and tie results directly to the model code!
Drake Examples ⭐ 58
Example workflows for the drake R package
Drake ⭐ 57
The user manual for the drake R package
Reproduce Stock Market Direction Random Forests ⭐ 56
Reproduce research from paper "Predicting the direction of stock market prices using random forest"
Multipy ⭐ 52
Multiple hypothesis testing in Python
Alchemy ⭐ 50
Experiments logging & visualization
Dna Seq Varlociraptor ⭐ 49
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
Git Ghost ⭐ 49
Synchronize your working directory efficiently to a remote place without committing the changes.
Tensorhub ⭐ 48
TensorHub is a library built on top of TensorFlow 2.0 to provide simple, modular and repeatable abstractions to accelerate deep learning research.
Rebench ⭐ 47
Execute and document benchmarks reproducibly.
Outsider ⭐ 46
🔲®️ Install and run programs, outside of R, inside of R
Hydra Zen ⭐ 46
Configurable, reproducible, and scalable workflows in Python, via Hydra
Open Solution Googleai Object Detection ⭐ 44
Open solution to the Google AI Object Detection Challenge 🍁
Biosimspace ⭐ 43
Code and resources for the EPSRC BioSimSpace project.
Fertile ⭐ 43
creating optimal conditions for reproducibility
Gittargets ⭐ 42
Data version control for reproducible analysis pipelines in R with {targets}.
Rna Seq Kallisto Sleuth ⭐ 42
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Singularity Hpc ⭐ 41
Local filesystem registry for containers (intended for HPC) using Lmod or Environement Modules. Works for users and admins.
Ten Years ⭐ 40
Ten Years Reproducibility Challenge
Targets Minimal ⭐ 37
A minimal example data analysis project with the targets R package
Rr Organization1 ⭐ 36
The Organization lesson for the Reproducible Science Curriculum
Ro Crate ⭐ 36
Research Object Crate
Classification ⭐ 35
Catalyst.Classification
Scooby ⭐ 34
🐶 🕵️ Great Dane turned Python environment detective
Open Solution Value Prediction ⭐ 34
Open solution to the Santander Value Prediction Challenge 🐠
Reproducible ⭐ 32
A set of tools for R that enhance reproducibility beyond package management
Docker Images ⭐ 32
SAT Heritage: a community-driven effort for archiving, building and running more than thousand SAT solvers
Plz ⭐ 31
Say the magic word 😸
Ecobidas ⭐ 30
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
Reproducibilidad ⭐ 30
Reproducible Science: what, why, how
Stantargets ⭐ 29
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
Rempi ⭐ 28
ReMPI (MPI Record-and-Replay)
Software Dev ⭐ 28
Coding Standards for the USC Biostats group
Daskperiment ⭐ 27
Reproducibility for Humans: A lightweight tool to perform reproducible machine learning experiment.
Ukbrest ⭐ 27
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
Prodigenr ⭐ 27
Project directory generator R package
R.rsp ⭐ 27
📄 R package: Dynamic generation of scientific reports
Segmentation ⭐ 27
Catalyst.Segmentation
Ml Project Template ⭐ 25
ML project template facilitating both research and production phases.
1-100 of 371 projects

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Data Storage 📦 132
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Frameworks 📦 198
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Hardware 📦 148
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Learning Resources 📦 147
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