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The Top 23 Machine Learning Genomics Open Source Projects

Open source projects categorized as Machine Learning Genomics
Categories > Science > Genomics
Categories > Machine Learning > Machine Learning
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 5 months ago
Healthcare_ml ⭐ 426
A curated list of ML|NLP resources for healthcare.
most recent commit a year ago
Glow ⭐ 251
An open-source toolkit for large-scale genomic analysis
dependent packages 1total releases 8most recent commit 3 months ago
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19most recent commit 3 years ago
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20most recent commit 5 months ago
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Dkm ⭐ 94
Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features
most recent commit a year ago
Bwa Meme ⭐ 92
BWA-MEME: Faster BWA-MEM2 using learned-index
most recent commit 6 months ago
Gnomix ⭐ 57
A fast, scalable, and accurate local ancestry method.
total releases 7most recent commit 6 months ago
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Scvae ⭐ 52
Deep learning for single-cell transcript counts
total releases 10most recent commit 4 years ago
Kover ⭐ 47
Learn interpretable computational phenotyping models from k-merized genomic data
most recent commit 2 years ago
Neural Admixture ⭐ 44
Rapid population clustering with autoencoders
total releases 17most recent commit 7 months ago
Eugene ⭐ 44
Elucidating the Utility of Genomic Elements with Neural Nets
most recent commit 5 months ago
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4most recent commit 6 years ago
Deepg ⭐ 24
DeepG, or 'Deep Genomics', is a R library which allows to train and apply deep neural networks on genomic datasets
most recent commit 3 months ago
Genoml2 ⭐ 17
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
most recent commit 6 months ago
Mantis Ml Release ⭐ 15
mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
total releases 12most recent commit 4 years ago
Mural ⭐ 15
MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.
most recent commit 3 months ago
Awesome List Machine Learning Healthcare ⭐ 13
A list of awesome resources on the application of machine learning in healthcare
most recent commit 4 years ago
Clustassess ⭐ 13
Tools for assessing clustering robustness
total releases 3most recent commit 2 years ago
Mimsi ⭐ 12
Microsatellite Instability Classification using Multiple Instance Learning
total releases 1most recent commit 2 years ago
The 2 Most Depended On Machine Learning Genomics Open Source Projects
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
Glow ⭐ 251
An open-source toolkit for large-scale genomic analysis
dependent packages 1total releases 8latest release June 23, 2020most recent commit 3 months ago
The 10 Latest Releases In Machine Learning Genomics Open Source Projects
Neural Admixture ⭐ 44
Rapid population clustering with autoencoders
total releases 17latest release September 27, 2023most recent commit 7 months ago
Cubat ⭐ 5
This project is no longer being updated and has been discontinued.
total releases 7latest release January 25, 2023most recent commit 7 months ago
Gnomix ⭐ 57
A fast, scalable, and accurate local ancestry method.
total releases 7latest release June 25, 2022most recent commit 6 months ago
Clustassess ⭐ 13
Tools for assessing clustering robustness
total releases 3latest release January 26, 2022most recent commit 2 years ago
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20latest release October 08, 2021most recent commit 5 months ago
Mimsi ⭐ 12
Microsatellite Instability Classification using Multiple Instance Learning
total releases 1latest release March 26, 2021most recent commit 2 years ago
Gcgc ⭐ 8
An ML-feature processing library for biological sequences.
total releases 67latest release October 14, 2020most recent commit 4 years ago
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19latest release August 04, 2020most recent commit 3 years ago
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