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The Top 23 Genome Vcf Open Source Projects

Open source projects categorized as Genome Vcf
Categories > Science > Genome
Categories > Science > Vcf
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 3 months ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 9 months ago
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3most recent commit 5 months ago
Vcftools ⭐ 415
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
most recent commit a year ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Gridss ⭐ 212
GRIDSS: the Genomic Rearrangement IDentification Software Suite
most recent commit a year ago
Lancet ⭐ 145
Microassembly based somatic variant caller for NGS data
most recent commit 2 years ago
Sigprofilerextractor ⭐ 132
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
dependent packages 3total releases 50most recent commit 5 months agopypi SigProfilerExtractor} Downloads
Variantspark ⭐ 121
machine learning for genomic variants
total releases 38most recent commit a year ago
Vcf Kit ⭐ 107
VCF-kit: Assorted utilities for the variant call format
total releases 18most recent commit 8 months ago
Peddy ⭐ 104
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
most recent commit 3 years ago
Pandora ⭐ 98
Pan-genome inference and genotyping with long noisy or short accurate reads
most recent commit 4 months ago
Genomewarp ⭐ 96
GenomeWarp translates genetic variants from one genome assembly version to another.
most recent commit 10 months ago
Expecto ⭐ 95
predicting expression effects of human genome variants ab initio from sequence
most recent commit 3 years ago
Pipeline Structural Variation ⭐ 87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
most recent commit 3 years ago
Parliament2 ⭐ 83
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
most recent commit 3 years ago
Mocha ⭐ 70
MOsaic CHromosomal Alterations (MoChA) caller
most recent commit 5 months ago
Bcbio.variation ⭐ 66
Toolkit to analyze genomic variation data, built on the GATK with Clojure
total releases 15most recent commit 8 years ago
Simug ⭐ 58
simuG: a general-purpose genome simulator
most recent commit 2 years ago
The 3 Most Depended On Genome Vcf Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
The 10 Latest Releases In Genome Vcf Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Introgression Detection ⭐ 31
total releases 24latest release October 16, 2023most recent commit 4 months ago
Variantspark ⭐ 121
machine learning for genomic variants
total releases 38latest release May 20, 2022most recent commit a year ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Toil Vg ⭐ 9
Distributed and cloud computing framework for vg
total releases 415latest release September 23, 2021most recent commit 3 years ago
Varifier ⭐ 13
Variant call verification
total releases 3latest release April 08, 2021most recent commit a year ago
Vcf Kit ⭐ 107
VCF-kit: Assorted utilities for the variant call format
total releases 18latest release December 20, 2020most recent commit 8 months ago
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3latest release October 11, 2020most recent commit 5 months ago
Gsort ⭐ 26
sort genomic data
total releases 4latest release October 28, 2019most recent commit 4 years ago
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