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The Top 23 Pipeline Genome Open Source Projects

Open source projects categorized as Pipeline Genome
Categories > Science > Genome
Categories > Data Processing > Pipeline
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 6 months ago
Nf Anvio Pangenome ⭐ 14
Analyze a set of genomes with the anvi'o pangenome pipeline
most recent commit 7 months ago
Sc2 Illumina Pipeline ⭐ 14
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
most recent commit 3 years ago
Ribap ⭐ 14
A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
most recent commit 8 months ago
Chip Nf ⭐ 13
An automated ChIP-seq pipeline using Nextfow
most recent commit 2 years ago
Ppspcp ⭐ 13
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
most recent commit 3 years ago
Falcon Genome ⭐ 13
Falcon Accelerated Genomics Pipelines
most recent commit 5 years ago
Pangenomepipeline ⭐ 12
PanGenomePipeline
most recent commit 2 years ago
Zika Seq ⭐ 12
Pipelines to do MinION sequencing of Zika virus
most recent commit 5 years ago
Gwas ⭐ 12
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
most recent commit a year ago
Mfannot ⭐ 12
MFannot is a program for the annotation of mitochondrial and plastid genomes
most recent commit 7 months ago
Genomechronicler ⭐ 12
most recent commit 7 months ago
Bohra ⭐ 12
A pipeline for bioinformatics analysis of bacterial genomes
total releases 52most recent commit 3 years ago
Dasvc ⭐ 11
De-novo Assembly Structural Variant Caller
most recent commit 8 years ago
Minys ⭐ 11
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.
most recent commit 2 years ago
Baseqdrops ⭐ 11
A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data.
most recent commit 5 years ago
Mhic ⭐ 11
most recent commit 4 years ago
Plasmident ⭐ 10
most recent commit 3 years ago
Piperiboseq ⭐ 10
A comprehensive pipeline for Ribo-seq data analysis
most recent commit 5 months ago
Dropseqrunner ⭐ 10
Lightweight pipeline for processing droplet-based single-cell RNA-seq data
most recent commit 4 years ago
Strainsifter ⭐ 10
A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
most recent commit 6 years ago
Damidseq_pipeline ⭐ 10
An automated pipeline for processing DamID sequencing datasets
most recent commit a year ago
Pigx_bsseq ⭐ 10
bisulfite sequencing pipeline from fastq to methylation reports
most recent commit a year ago
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