Plasmident
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Hic_tools | 454 | 4 months ago | 1 | mit | ||||||
| A collection of tools for Hi-C data analysis | ||||||||||
| Sarek | 299 | 3 months ago | 180 | mit | Nextflow | |||||
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
| Edta | 294 | 3 months ago | 35 | gpl-3.0 | Perl | |||||
| Extensive de-novo TE Annotator | ||||||||||
| Atac Seq Pipeline | 290 | a year ago | 51 | mit | Python | |||||
| ENCODE ATAC-seq pipeline | ||||||||||
| Bactopia | 281 | 7 months ago | 67 | mit | Nextflow | |||||
| A flexible pipeline for complete analysis of bacterial genomes | ||||||||||
| Pgap | 263 | 3 months ago | 15 | other | Common Workflow Language | |||||
| NCBI Prokaryotic Genome Annotation Pipeline | ||||||||||
| Funannotate | 261 | 5 months ago | 13 | August 10, 2022 | 204 | bsd-2-clause | Python | |||
| Eukaryotic Genome Annotation Pipeline | ||||||||||
| Pepper | 216 | 6 months ago | 8 | November 19, 2020 | 18 | mit | Python | |||
| PEPPER-Margin-DeepVariant | ||||||||||
| Chip Seq Pipeline2 | 188 | a year ago | 35 | mit | Python | |||||
| ENCODE ChIP-seq pipeline | ||||||||||
| Vgp Assembly | 160 | a year ago | 1 | other | Shell | |||||
| VGP repository for the genome assembly working group | ||||||||||
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