Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Mapping Genome Open Source Projects

Open source projects categorized as Mapping Genome
Categories > Science > Genome
Categories > Mapping > Mapping
Sniffles ⭐ 479
Structural variation caller using third generation sequencing
total releases 8most recent commit 4 months ago
Fastani ⭐ 301
Fast Whole-Genome Similarity (ANI) Estimation
most recent commit 9 months ago
Mashmap ⭐ 243
A fast approximate aligner for long DNA sequences
most recent commit 4 months ago
Chromosomemappings ⭐ 204
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
most recent commit a year ago
Graphmap ⭐ 137
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms113 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
most recent commit 5 years ago
Winnowmap ⭐ 131
Long read / genome alignment software
most recent commit 2 years ago
Mirdeep2 ⭐ 120
Discovering known and novel miRNAs from small RNA sequencing data
most recent commit 5 months ago
Tadbit ⭐ 89
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
most recent commit a year ago
Metamaps ⭐ 88
Long-read metagenomic analysis
most recent commit 7 months ago
Mitobim ⭐ 74
MITObim - mitochondrial baiting and iterative mapping
most recent commit 6 years ago
Hera ⭐ 74
most recent commit 5 years ago
Scrnaseqpipeline ⭐ 73
most recent commit 6 years ago
Qtl ⭐ 71
R/qtl: A QTL mapping environment
most recent commit 5 months ago
Bactmap ⭐ 45
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
most recent commit 7 months ago
Pblat ⭐ 37
parallelized blat with multi-threads support
most recent commit a year ago
Irep ⭐ 37
scripts for estimating bacteria replication rates based on population genome copy number variation
total releases 17most recent commit 4 years ago
Gem3 Mapper ⭐ 27
GEM-Mapper v3
most recent commit 4 years ago
Qtip ⭐ 23
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
most recent commit 5 years ago
Repenrich2 ⭐ 22
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
most recent commit 2 years ago
Repenrich ⭐ 21
RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
most recent commit 2 years ago
Echolocator ⭐ 20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
most recent commit a year ago
Mrsfast ⭐ 20
mrsFAST: micro-read substitution-only Fast Alignment Search Tool
most recent commit 4 years ago
Mageri ⭐ 19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
most recent commit 7 years ago
The 5 Latest Releases In Mapping Genome Open Source Projects
Sniffles ⭐ 479
Structural variation caller using third generation sequencing
total releases 8latest release July 27, 2023most recent commit 4 months ago
Bamstats ⭐ 9
A command line tool to compute mapping statistics from a BAM file
total releases 11latest release March 07, 2022most recent commit 2 years ago
Biobtree ⭐ 13
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes
total releases 19latest release March 30, 2021most recent commit 2 years ago
Hichap_master ⭐ 9
An integrated package to process diploid Hi-C data
total releases 29latest release October 27, 2020most recent commit 2 years ago
Irep ⭐ 37
scripts for estimating bacteria replication rates based on population genome copy number variation
total releases 17latest release February 14, 2018most recent commit 4 years ago
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.