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The Top 15 Variants Cancer Genomics Open Source Projects

Open source projects categorized as Variants Cancer Genomics
Categories > Science > Cancer Genomics
Categories > Variants
Maftools ⭐ 400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
most recent commit 3 months ago
Awesome Cancer Variant Databases ⭐ 284
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
most recent commit 6 months ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Lancet ⭐ 145
Microassembly based somatic variant caller for NGS data
most recent commit 2 years ago
Teamteri ⭐ 50
Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure
most recent commit 8 months ago
Cpsr ⭐ 50
Cancer Predisposition Sequencing Reporter (CPSR)
most recent commit 9 months ago
Civic Client ⭐ 49
Web client for CIViC: Clinical Interpretations of Variants in Cancer
most recent commit 2 years ago
Civic Server ⭐ 39
Backend Server for CIViC Project
most recent commit 10 months ago
Cacao ⭐ 22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
most recent commit 3 years ago
Civic V2 ⭐ 18
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
most recent commit 3 months ago
Variants2neoantigen ⭐ 14
a neoantigen calling pipeline begins from variants record file (MAF)
most recent commit 5 years ago
Umccrise ⭐ 14
🐍 DRAGEN Tumor/Normal workflow post-processing
most recent commit 8 months ago
Svparser ⭐ 6
Explore and filter structural variant calls from Lumpy and Delly VCF files
most recent commit 3 years ago
Virtual Normal Correction ⭐ 6
Set of commandline tools for analysis of tumor variants without a matching normal. Method described in Genome Research: http://genome.cshlp.org/content/25/9/1382.full
most recent commit 2 years ago
Fings ⭐ 6
Filters for Next Generation Sequencing
most recent commit 2 years ago
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