Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Bioinformatics Bam Open Source Projects

Open source projects categorized as Bioinformatics Bam
Categories > Bam
Categories > Data Processing > Bioinformatics
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1most recent commit 8 months ago
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Verifybamid ⭐ 78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
most recent commit 4 months ago
Simplesam ⭐ 55
Simple pure Python SAM parser and objects for working with SAM records
most recent commit 2 years ago
Bamtocov ⭐ 43
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
most recent commit 2 years ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5most recent commit 4 years ago
Hts Nim Tools ⭐ 41
useful command-line tools written to show-case hts-nim
most recent commit 3 years ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 8 months agopypi fuc} Downloads
Bioinf Commons ⭐ 30
Bioinformatics library in Kotlin
most recent commit 3 months ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Xam.jl ⭐ 24
Parse and process SAM and BAM formatted files
most recent commit 3 months ago
Gssplayground ⭐ 21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
most recent commit 4 years ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
most recent commit 7 months ago
Hts Python ⭐ 18
pythonic wrapper for htslib
most recent commit 7 years ago
Phat ⭐ 17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
most recent commit 2 years ago
Efp Seq_browser ⭐ 12
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
most recent commit 2 months ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2most recent commit a year ago
Hts.cr ⭐ 11
HTSlib bindings for Crystal
most recent commit 9 months ago
Hts Rdf ⭐ 9
Managing sequencing data with RDF
most recent commit 7 months ago
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19most recent commit 3 months ago
Bamscope ⭐ 7
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.
most recent commit 4 months ago
The 2 Most Depended On Bioinformatics Bam Open Source Projects
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
The 8 Latest Releases In Bioinformatics Bam Open Source Projects
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
Ruby Htslib ⭐ 7
HTSlib bindings for Ruby
total releases 19latest release May 17, 2023most recent commit 3 months ago
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1latest release October 05, 2022most recent commit 8 months ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
latest release May 30, 2021most recent commit 7 months ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5latest release June 01, 2019most recent commit 4 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37latest release May 10, 2019most recent commit 3 months ago
Fast5seek ⭐ 11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
total releases 2latest release October 19, 2018most recent commit a year ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.