Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Galaxy | 1,211 | 2 | 23 | 4 months ago | 30 | December 08, 2023 | 2,169 | other | Python | |
Data intensive science for everyone. | ||||||||||
Rnaseq | 718 | 4 months ago | 90 | mit | Nextflow | |||||
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. | ||||||||||
Cnvkit | 435 | 9 | 5 months ago | 50 | February 24, 2023 | 278 | other | Python | ||
Copy number variant detection from targeted DNA sequencing | ||||||||||
Sarek | 299 | 4 months ago | 180 | mit | Nextflow | |||||
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
Snapatac | 227 | 2 years ago | 135 | gpl-3.0 | R | |||||
Analysis Pipeline for Single Cell ATAC-seq | ||||||||||
Ugene | 190 | 4 months ago | 6 | gpl-2.0 | C++ | |||||
UGENE is free open-source cross-platform bioinformatics software | ||||||||||
Sunbeam | 157 | 4 months ago | 14 | HTML | ||||||
A robust, extensible metagenomics pipeline | ||||||||||
Ampliseq | 141 | 4 months ago | 15 | mit | Nextflow | |||||
Amplicon sequencing analysis workflow using DADA2 and QIIME2 | ||||||||||
Sequana | 136 | 8 | 4 months ago | 90 | December 06, 2023 | 12 | bsd-3-clause | Jupyter Notebook | ||
Sequana: a set of Snakemake NGS pipelines | ||||||||||
Rnaseq Workflow | 133 | 7 years ago | 1 | R | ||||||
A repository for setting up a RNAseq workflow |