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22 search results found
Falco
⭐
50
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
Fastq Screen
⭐
42
Detecting contamination in NGS data and multi-species analysis
Ngsane
⭐
35
Analysis Framework for Biological Data from High Throughput Experiments
Calib
⭐
34
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
Ublastx_stageone
⭐
24
This is the source code for multisamples ARGs profiling using SARG2.0 database
Rnaseq Nf
⭐
20
RNAseq analysis pipeline
Dnbelab_c_series_scrna Analysis Software
⭐
16
An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
Ob Pipelines
⭐
11
Luigi pipelines and Dockerized apps for bioinformatics and data science
Destin
⭐
11
Toolkit for single-cell analysis of chromatin accessibility
Sip
⭐
7
SIP, a Single-cell Interchangeable Pipeline, still under construction
Mag_snakemake_wf
⭐
7
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
4 Rna Seq
⭐
7
A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds
Braincode
⭐
7
Script and pipeline for BRAINcode project
Tetools
⭐
6
TE tools for TE RNASeq and smallRNASeq analysis with galaxy
Sc_read_kallisto_wrapper
⭐
6
wrapper for single cell transcriptomics pipeline with kallisto
Mercat2
⭐
6
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Genome Analysis Tutorial
⭐
6
The Genome Analysis Tutorial Page.
Sequencing_tools
⭐
6
A python package storing different tools for different NGS operations
Pipeline
⭐
6
Consensus assembly and allele interpretation pipeline.
Fastqcleaner
⭐
6
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
Asimplenanoporetutorial
⭐
5
Metabarcodes_tutorials
⭐
5
Tutorials for metabarcode analysis
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