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Search results for sequencing rna seq
rna-seq
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sequencing
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28 search results found
Rnaseq
⭐
718
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Rna Seq Analysis
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614
RNAseq analysis notes from Ming Tang
Mixcr
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291
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Sccatch
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171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Sequana
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136
Sequana: a set of Snakemake NGS pipelines
Rnaseq Workflow
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133
A repository for setting up a RNAseq workflow
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Xpore
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122
Identification of differential RNA modifications from nanopore direct RNA sequencing
Alevin Fry
⭐
115
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Rnalysis
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114
RNA sequencing analysis software
Sg Nex Data
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80
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Poreplex
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51
A versatile sequenced read processor for nanopore direct RNA sequencing
Ngs
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30
Next-Gen Sequencing tools from the Horvath Lab
Wiggleplotr
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28
A small R package to make sequencing read coverage plots in R.
Rnaseq
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28
RNASeq pipeline
Expressionmatrix2
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27
Software for exploration of gene expression data from single-cell RNA sequencing.
Deepstats
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27
deepStats: a stastitical toolbox for deeptools and genomic signals
Smallrnaseq
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26
small rna-seq analysis package
Teaching
⭐
25
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Pipeliner
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25
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Scmut
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13
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Nasqar
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10
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Star Seqr
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9
RNA Fusion Detection and Quantification
Rna Seek
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8
A comprehensive quality-control and quantification RNA-seq pipeline
Rnaseq Cb321
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8
June 5, 2019
Biowardrobe
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7
BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Braincode
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7
Script and pipeline for BRAINcode project
Ppcseq
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6
Probabilistic outlier identification for bulk RNA sequencing data
Decontaminer
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5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
Phd Thesis
⭐
5
My PhD thesis - "Tools and techniques for single-cell RNA sequencing data"
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