Kmerstream
Streaming algorithm for computing kmer statistics for massive genomics datasets
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Assembly Stats | 92 | a year ago | other | C++ | ||||||
| Get assembly statistics from FASTA and FASTQ files | ||||||||||
| Cogent3 | 79 |  | 2 | 3 months ago | 18 | September 22, 2023 | 35 | bsd-3-clause | Python | |
| Comparative Genomics Toolkit 3 | ||||||||||
| Bigbio | 54 | 7 years ago | 3 | Jupyter Notebook | ||||||
| Reading | 48 | 9 years ago | ||||||||
| A collection of papers and books that Storey Lab members should read and others may find useful | ||||||||||
| Kmerstream | 46 | 4 years ago | 6 | C++ | ||||||
| Streaming algorithm for computing kmer statistics for massive genomics datasets | ||||||||||
| Fishpond | 23 | 8 months ago | 1 | R | ||||||
| Differential expression and allelic analysis, nonparametric statistics | ||||||||||
| Nullranges | 23 | 8 months ago | 3 | gpl-3.0 | R | |||||
| Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or set of control ranges that are matched across one or more covariates. | ||||||||||
| Tutorials | 18 | 2 years ago | ||||||||
| Tutorials on evolutionary genomics | ||||||||||
| Genomenote | 16 | 4 months ago | 14 | mit | Groovy | |||||
| This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics. | ||||||||||
| Blogs | 16 | 4 years ago | mit | |||||||
| Links to data science, bioinformatics, statistics, and machine learning resources | ||||||||||
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