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Clinical_variant_database

Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioinformatics project @ University of Exeter
Alternatives To Clinical_variant_database
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Select To Compare
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 2 years ago
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90most recent commit 3 months agopypi cyvcf2} Downloads
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41most recent commit 5 months ago
Truvari ⭐ 284
Structural variant toolkit for VCFs
total releases 23most recent commit 14 days ago


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Alternative Project Comparisons
Clinical_variant_database vs Hail
Clinical_variant_database vs Htslib
Clinical_variant_database vs Nucleus
Clinical_variant_database vs Bioawk
Clinical_variant_database vs Nanopolish
Clinical_variant_database vs Snippy
Clinical_variant_database vs Cyvcf2
Clinical_variant_database vs Vcfanno
Clinical_variant_database vs Survivor
Clinical_variant_database vs Truvari
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