Popstrat
Population Stratification Analysis on Genomics Data Using Deep Learning
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Gatk | 1,576 | 2 | a month ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Adam | 966 | 20 | 17 | 3 months ago | 14 | December 16, 2020 | 35 | apache-2.0 | Scala | |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. | ||||||||||
| Glow | 251 | 1 | 3 months ago | 8 | June 23, 2020 | 73 | apache-2.0 | Scala | ||
| An open-source toolkit for large-scale genomic analysis | ||||||||||
| Seqr | 158 | 3 months ago | 60 | agpl-3.0 | Python | |||||
| web-based analysis tool for rare disease genomics | ||||||||||
| Genomicsdb | 88 | 2 | 3 months ago | 35 | October 12, 2023 | 28 | other | C++ | ||
| High performance data storage for importing, querying and transforming variants. | ||||||||||
| Tiledb Vcf | 79 | 3 months ago | 18 | mit | C++ | |||||
| Efficient variant-call data storage and retrieval library using the TileDB storage library. | ||||||||||
| Spark Examples | 75 | 7 years ago | 10 | apache-2.0 | Scala | |||||
| Apache Spark jobs such as Principal Coordinate Analysis. | ||||||||||
| Bigbio | 54 | 7 years ago | 3 | Jupyter Notebook | ||||||
| Gor | 37 | 4 months ago | 7 | agpl-3.0 | Java | |||||
| GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine. | ||||||||||
| Disq | 31 | 3 | 8 months ago | 10 | February 09, 2021 | 17 | mit | Java | ||
| A library for manipulating bioinformatics sequencing formats in Apache Spark | ||||||||||
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