Genomicsdb
High performance data storage for importing, querying and transforming variants.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Gatk | 1,576 | 2 | a month ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Adam | 966 | 20 | 17 | 3 months ago | 14 | December 16, 2020 | 35 | apache-2.0 | Scala | |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. | ||||||||||
| Variantspark | 121 | a year ago | 38 | May 20, 2022 | 62 | other | JavaScript | |||
| machine learning for genomic variants | ||||||||||
| Genomicsdb | 88 | 2 | 3 months ago | 35 | October 12, 2023 | 28 | other | C++ | ||
| High performance data storage for importing, querying and transforming variants. | ||||||||||
| Tiledb Vcf | 79 | 3 months ago | 18 | mit | C++ | |||||
| Efficient variant-call data storage and retrieval library using the TileDB storage library. | ||||||||||
| Cannoli | 37 | 1 | 3 months ago | 11 | December 17, 2020 | 1 | apache-2.0 | Scala | ||
| Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed. | ||||||||||
| Gor | 37 | 4 months ago | 7 | agpl-3.0 | Java | |||||
| GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine. | ||||||||||
| Spark Tutorial | 34 | 8 years ago | apache-2.0 | Scala | ||||||
| Introduction to predictive modeling in Spark with applications in pharmaceutical bioinformatics | ||||||||||
| Discount | 14 | a year ago | 6 | February 13, 2023 | gpl-3.0 | Scala | ||||
| Very large scale k-mer counting and analysis on Apache Spark. | ||||||||||
| Spark Genome Alignment Demo | 13 | 8 years ago | 2 | Scala | ||||||
| An example of bioinformatics and bigdata tools can playing nicely together | ||||||||||
Alternatives To GenomicsdbSelect To Compare
Alternative Project Comparisons
Popular Spark Projects
Popular Bioinformatics Projects
Popular Data Processing Categories
Related Searches
Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Java
C Plus Plus
Scala
Spark
Bioinformatics
Genomics
Mpi