Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Cbioportal | 535 | 3 months ago | 495 | agpl-3.0 | Java | |||||
cBioPortal for Cancer Genomics | ||||||||||
Postgui | 335 | 2 years ago | 5 | gpl-3.0 | JavaScript | |||||
A React web application to query and share any PostgreSQL database. | ||||||||||
Artemis | 191 | a year ago | 25 | other | Java | |||||
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation | ||||||||||
Genome_updater | 123 | 3 months ago | 3 | mit | Shell | |||||
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy | ||||||||||
Staramr | 75 | 8 months ago | 18 | August 24, 2023 | 6 | apache-2.0 | Python | |||
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases. | ||||||||||
Kmer Db | 68 | a year ago | 4 | gpl-3.0 | C++ | |||||
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.). | ||||||||||
Pymatgen Db | 46 | 6 | 3 | 4 months ago | 54 | May 28, 2021 | 2 | mit | Python | |
Pymatgen-db provides an addon to the Python Materials Genomics (pymatgen) library (https://pypi.python.org/pypi/pymatgen) that allows the creation of Materials Project-style databases for management of materials data. | ||||||||||
Barque | 25 | 3 months ago | 1 | Python | ||||||
Environmental DNA metabarcoding taxonomic identification | ||||||||||
Recognizer | 24 | 4 months ago | bsd-3-clause | HTML | ||||||
A tool for domain based annotation with databases from the Conserved Domains Database | ||||||||||
Socru | 23 | 4 months ago | 3 | gpl-3.0 | Python | |||||
Order and orientation of complete bacterial genomes |