Project Name	Stars	Most Recent Commit	Open Issues	License	Language
Hh Suite	429	a year ago	143	gpl-3.0	C
Remote protein homology detection suite.
Ksw2	115	10 months ago	9	other	C
Global alignment and alignment extension
Cute Nucleotides	53	3 years ago		mit	Rust
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
Opal	24	2 years ago	20	mit	C++
SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
Hibag	23	3 months ago	13		C++
R package – HLA Genotype Imputation with Attribute Bagging (development version only)

Alternatives To Ksw2

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Hh Suite ⭐ 429

Remote protein homology detection suite.

most recent commit a year ago

Ksw2 ⭐ 115

Global alignment and alignment extension

most recent commit 10 months ago

Cute Nucleotides ⭐ 53

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

most recent commit 3 years ago

Opal ⭐ 24

SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)

most recent commit 2 years ago

Hibag ⭐ 23

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

most recent commit 3 months ago

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Ksw2 vs Hh Suite

Ksw2 vs Cute Nucleotides

Ksw2 vs Opal

Ksw2 vs Hibag

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