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Search results for c sequence alignment
c
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sequence-alignment
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22 search results found
Minimap2
⭐
1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Bwa
⭐
1,282
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Minigraph
⭐
367
Proof-of-concept seq-to-graph mapper and graph generator
Miniprot
⭐
231
Align proteins to genomes with splicing and frameshift
Ksw2
⭐
115
Global alignment and alignment extension
Kalign
⭐
105
A fast multiple sequence alignment program.
Abpoa
⭐
99
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Plmc
⭐
83
Inference of couplings in proteins and RNAs from sequence variation
Snp Dists
⭐
68
Pairwise SNP distance matrix from a FASTA sequence alignment
Unimap
⭐
49
A fork of minimap2 optimized for assembly-to-reference alignment
Exonerate
⭐
45
A generic tool for sequence alignment
Miniwfa
⭐
37
A reimplementation of the WaveFront Alignment algorithm at low memory
Bsalign
⭐
27
Banded Striped DNA Sequence Alignment
Wfa Gpu
⭐
24
GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
Chromeister
⭐
16
A dotplot generator for large chromosomes
Aim
⭐
15
AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
Yass
⭐
14
genomic alignment similarity search tool
Msa
⭐
12
R package for multiple sequence alignment
Abpoa
⭐
10
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Gsalign
⭐
9
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
Blat
⭐
8
BLAST-Like Alignment Tool
Align
⭐
6
Performs global and local sequence alignment.
Swift
⭐
5
GPU-based DNA sequence alignment program using Smith-Waterman
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1-22 of 22 search results
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