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Miniprot

Align proteins to genomes with splicing and frameshift
Stars
231
License
mit
Open Issues
12
Most Recent Commit
8 months ago
Programming Language
C
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Alternatives To Miniprot
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Biopython3,918pypi biopython} Downloads1,4651,3733 months ago58February 13, 2023545otherPython
Official git repository for Biopython (originally converted from CVS)
Minimap21,613pypi mappy} Downloads8323 months ago27December 26, 2021154otherC
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Bwa1,282
a year ago1March 03, 2021211gpl-3.0C
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Jcvi650pypi jcvi} Downloads114 months ago97August 30, 202341bsd-2-clausePython
Python library to facilitate genome assembly, annotation, and comparative genomics
Bwa Mem2645
4 months ago81otherC++
The next version of bwa-mem
Vsearch605
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Versatile open-source tool for microbiome analysis
Biojava56496163 months ago56June 02, 202371lgpl-2.1Java
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Edlib421pypi edlib} Downloads735a year ago20August 20, 202164mitC++
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Seqan3373
3 months ago24otherC++
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Minigraph367
4 months ago1June 21, 202344mitC
Proof-of-concept seq-to-graph mapper and graph generator
Alternatives To Miniprot
Select To Compare
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Minimap2 ⭐ 1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages 32total releases 27most recent commit 3 months agopypi mappy} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Bwa Mem2 ⭐ 645
The next version of bwa-mem
most recent commit 4 months ago
Vsearch ⭐ 605
Versatile open-source tool for microbiome analysis
total releases 1most recent commit 3 months ago


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Alternative Project Comparisons
Miniprot vs Biopython
Miniprot vs Minimap2
Miniprot vs Bwa
Miniprot vs Jcvi
Miniprot vs Bwa Mem2
Miniprot vs Vsearch
Miniprot vs Biojava
Miniprot vs Edlib
Miniprot vs Seqan3
Miniprot vs Minigraph
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