Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Nextflow	2,447		16	3 months ago	250	November 24, 2023	336	apache-2.0	Groovy
A DSL for data-driven computational pipelines
Sarek	299			3 months ago			180	mit	Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Canvasxpress	282		4	3 months ago	43	November 08, 2023	7		R
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Seq2science	132			5 months ago			18	mit	Python
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Sarek	126			4 years ago			n,ull	mit	Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Panoptes	59			4 months ago	5	August 07, 2023	23	mit	CSS
Monitor computational workflows in real time
Chembl Downloader	55			3 months ago			2	mit	Jupyter Notebook
Write reproducible code for getting and processing ChEMBL
Genepattern Notebook	41	2	1	6 months ago	63	November 03, 2023		bsd-3-clause	Python
Platform for integrating genomic analysis with Jupyter Notebooks.
Ngs Preprocess	23			3 months ago			3	gpl-3.0	Nextflow
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Kogia	22			8 months ago					Dockerfile
Docker containers for bioinformatics with a small footprint

Alternatives To Chromatographr

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Nextflow ⭐ 2,447

A DSL for data-driven computational pipelines

dependent packages 16total releases 250most recent commit 3 months ago

Sarek ⭐ 299

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

most recent commit 3 months ago

Canvasxpress ⭐ 282

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

dependent packages 4total releases 43most recent commit 3 months ago

Seq2science ⭐ 132

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

most recent commit 5 months ago

Sarek ⭐ 126

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

most recent commit 4 years ago

Panoptes ⭐ 59

Monitor computational workflows in real time

total releases 5most recent commit 4 months ago

Chembl Downloader ⭐ 55

Write reproducible code for getting and processing ChEMBL

most recent commit 3 months ago

Genepattern Notebook ⭐ 41

Platform for integrating genomic analysis with Jupyter Notebooks.

dependent packages 1total releases 63most recent commit 6 months ago

Ngs Preprocess ⭐ 23

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

most recent commit 3 months ago

Kogia ⭐ 22

Docker containers for bioinformatics with a small footprint

most recent commit 8 months ago

Suggest An Alternative To chromatographR

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