Disty
Disty McMatrixface - compute a distance matrix from a core genome alignment file
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Sigprofilerextractor | 132 |  | 3 | 6 months ago | 50 | November 21, 2023 | 1 | bsd-2-clause | Python | |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
| Enrichm | 60 | 2 years ago | 42 | September 02, 2022 | 27 | gpl-3.0 | Python | |||
| Toolbox for comparative genomics of MAGs | ||||||||||
| Cnview | 50 | 6 years ago | 3 | mit | R | |||||
| Visualization and annotation of CNVs from population-scale whole-genome sequencing data | ||||||||||
| Tracts | 20 | 7 months ago | 16 | gpl-2.0 | Python | |||||
| A set of tools for modelling ancestry patterns along the genome. | ||||||||||
| Cvtree | 19 | 5 months ago | 3 | mit | C++ | |||||
| A whole-genome and alignment-free prokaryotic phylogeny tool | ||||||||||
| Helmsman | 19 | 3 years ago | 3 | mit | Python | |||||
| highly-efficient & lightweight mutation signature matrix aggregation | ||||||||||
| Chromeister | 16 | 2 years ago | 4 | gpl-3.0 | C | |||||
| A dotplot generator for large chromosomes | ||||||||||
| Snaptools | 11 | 4 years ago | 22 | September 04, 2019 | 20 | apache-2.0 | Python | |||
| A module for working with snap files in Python | ||||||||||
| Ggrasp | 7 | 6 months ago | 1 | gpl-2.0 | R | |||||
| Disty | 6 | 7 years ago | 7 | mit | C++ | |||||
| Disty McMatrixface - compute a distance matrix from a core genome alignment file | ||||||||||
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