Magma

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

Categories > Data Processing > Pipeline

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Stars

License

gpl-3.0

Open Issues

Most Recent Commit

4 months ago

Programming Language

Nextflow

Categories

Data Processing > Pipeline

Science > Genomics

Repo

Alternatives To Magma

Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Galaxy	1,211	2	23	4 months ago	30	December 08, 2023	2,169	other	Python
Data intensive science for everyone.
Scrna Seq_notes	478			5 months ago				mit	R
A list of scRNA-seq analysis tools
Juicer	313			a year ago			40	mit	Shell
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Sarek	299			4 months ago			180	mit	Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Bedops	244			2 years ago	1	March 03, 2021	17	other	C
:microscope: BEDOPS: high-performance genomic feature operations
Flowcraft	234			4 years ago	18	March 02, 2019	39	gpl-3.0	Python
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
Gatk Sv	148			4 months ago			101	bsd-3-clause	Python
A structural variation pipeline for short-read sequencing
Cloud Pipeline	137			4 months ago			840	apache-2.0	Java
Cloud agnostic genomics analysis, scientific computation and storage platform
Viral Ngs	129			4 years ago			60	other	Python
Viral genomics analysis pipelines
Sarek	126			4 years ago			n,ull	mit	Nextflow
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Alternatives To Magma

Select To Compare

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30most recent commit 4 months ago

Scrna Seq_notes ⭐ 478

A list of scRNA-seq analysis tools

most recent commit 5 months ago

Juicer ⭐ 313

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

most recent commit a year ago

Sarek ⭐ 299

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

most recent commit 4 months ago

Bedops ⭐ 244

:microscope: BEDOPS: high-performance genomic feature operations

total releases 1most recent commit 2 years ago

Flowcraft ⭐ 234

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

total releases 18most recent commit 4 years ago

Gatk Sv ⭐ 148

A structural variation pipeline for short-read sequencing

most recent commit 4 months ago

Cloud Pipeline ⭐ 137

Cloud agnostic genomics analysis, scientific computation and storage platform

most recent commit 4 months ago

Viral Ngs ⭐ 129

Viral genomics analysis pipelines

most recent commit 4 years ago

Sarek ⭐ 126

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

most recent commit 4 years ago

Suggest An Alternative To MAGMA

Alternative Project Comparisons

Magma vs Galaxy

Magma vs Scrna Seq_notes

Magma vs Cloud Pipeline

Magma vs Viral Ngs

Magma vs Sarek

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