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Automatically save and learn from Experiment results, leading to long-term, persistent optimization that remembers all your tests.
HyperparameterHunter provides a wrapper for machine learning algorithms that saves all the important data. Simplify the experimentation and hyperparameter tuning process by letting HyperparameterHunter do the hard work of recording, organizing, and learning from your tests — all while using the same libraries you already do. Don't let any of your experiments go to waste, and start doing hyperparameter optimization the way it was meant to be.
pip install hyperparameter-hunter
Don’t think of HyperparameterHunter as another optimization library that you bring out only when its time to do hyperparameter optimization. Of course, it does optimization, but its better to view HyperparameterHunter as your own personal machine learning toolbox/assistant.
The idea is to start using HyperparameterHunter immediately. Run all of your benchmark/one-off experiments through it.
The more you use HyperparameterHunter, the better your results will be. If you just use it for optimization, sure, it’ll do what you want, but that’s missing the point of HyperparameterHunter.
If you’ve been using it for experimentation and optimization along the entire course of your project, then when you decide to do hyperparameter optimization, HyperparameterHunter is already aware of all that you’ve done, and that’s when HyperparameterHunter does something remarkable. It doesn’t start optimization from scratch like other libraries. It starts from all of the Experiments and previous optimization rounds you’ve already run through it.
Set up an Environment to organize Experiments and Optimization results.
Any Experiments or Optimization rounds we perform will use our active Environment.
from hyperparameter_hunter import Environment, CVExperiment import pandas as pd from sklearn.datasets import load_breast_cancer from sklearn.model_selection import StratifiedKFold data = load_breast_cancer() df = pd.DataFrame(data=data.data, columns=data.feature_names) df['target'] = data.target env = Environment( train_dataset=df, # Add holdout/test dataframes, too results_path='path/to/results/directory', # Where your result files will go metrics=['roc_auc_score'], # Callables, or strings referring to `sklearn.metrics` cv_type=StratifiedKFold, # Class, or string in `sklearn.model_selection` cv_params=dict(n_splits=5, shuffle=True, random_state=32) )
Perform Experiments with your favorite libraries simply by providing model initializers and hyperparameters
# Same format used by `keras.wrappers.scikit_learn`. Nothing new to learn def build_fn(input_shape): # `input_shape` calculated for you model = Sequential([ Dense(100, kernel_initializer='uniform', input_shape=input_shape, activation='relu'), Dropout(0.5), Dense(1, kernel_initializer='uniform', activation='sigmoid') ]) # All layer arguments saved (whether explicit or Keras default) for future use model.compile(optimizer='adam', loss='binary_crossentropy', metrics=['accuracy']) return model experiment = CVExperiment( model_initializer=KerasClassifier, model_init_params=build_fn, # We interpret your build_fn to save hyperparameters in a useful, readable format model_extra_params=dict( callbacks=[ReduceLROnPlateau(patience=5)], # Use Keras callbacks batch_size=32, epochs=10, verbose=0 # Fit/predict arguments ) )
experiment = CVExperiment( model_initializer=LinearSVC, # (Or any of the dozens of other SK-Learn algorithms) model_init_params=dict(penalty='l1', C=0.9) # Default values used and recorded for kwargs not given )
experiment = CVExperiment( model_initializer=XGBClassifier, model_init_params=dict(objective='reg:linear', max_depth=3, n_estimators=100, subsample=0.5) )
experiment = CVExperiment( model_initializer=LGBMClassifier, model_init_params=dict(boosting_type='gbdt', num_leaves=31, max_depth=-1, min_child_samples=5, subsample=0.5) )
experiment = CVExperiment( model_initializer=CatboostClassifier, model_init_params=dict(iterations=500, learning_rate=0.01, depth=7, allow_writing_files=False), model_extra_params=dict(fit=dict(verbose=True)) # Send kwargs to `fit` and other extra methods )
experiment = CVExperiment( model_initializer=RGFClassifier, model_init_params=dict(max_leaf=1000, algorithm='RGF', min_samples_leaf=10) )
Just like Experiments, but if you want to optimize a hyperparameter, use the classes imported below
from hyperparameter_hunter import Real, Integer, Categorical from hyperparameter_hunter import optimization as opt
def build_fn(input_shape): model = Sequential([ Dense(Integer(50, 150), input_shape=input_shape, activation='relu'), Dropout(Real(0.2, 0.7)), Dense(1, activation=Categorical(['sigmoid', 'softmax'])) ]) model.compile( optimizer=Categorical(['adam', 'rmsprop', 'sgd', 'adadelta']), loss='binary_crossentropy', metrics=['accuracy'] ) return model optimizer = opt.RandomForestOptPro(iterations=7) optimizer.forge_experiment( model_initializer=KerasClassifier, model_init_params=build_fn, model_extra_params=dict( callbacks=[ReduceLROnPlateau(patience=Integer(5, 10))], batch_size=Categorical([32, 64]), epochs=10, verbose=0 ) ) optimizer.go()
optimizer = opt.DummyOptPro(iterations=42) optimizer.forge_experiment( model_initializer=AdaBoostClassifier, # (Or any of the dozens of other SKLearn algorithms) model_init_params=dict( n_estimators=Integer(75, 150), learning_rate=Real(0.8, 1.3), algorithm='SAMME.R' ) ) optimizer.go()
optimizer = opt.BayesianOptPro(iterations=10) optimizer.forge_experiment( model_initializer=XGBClassifier, model_init_params=dict( max_depth=Integer(low=2, high=20), learning_rate=Real(0.0001, 0.5), n_estimators=200, subsample=0.5, booster=Categorical(['gbtree', 'gblinear', 'dart']), ) ) optimizer.go()
optimizer = opt.BayesianOptPro(iterations=100) optimizer.forge_experiment( model_initializer=LGBMClassifier, model_init_params=dict( boosting_type=Categorical(['gbdt', 'dart']), num_leaves=Integer(5, 20), max_depth=-1, min_child_samples=5, subsample=0.5 ) ) optimizer.go()
optimizer = opt.GradientBoostedRegressionTreeOptPro(iterations=32) optimizer.forge_experiment( model_initializer=CatBoostClassifier, model_init_params=dict( iterations=100, eval_metric=Categorical(['Logloss', 'Accuracy', 'AUC']), learning_rate=Real(low=0.0001, high=0.5), depth=Integer(4, 7), allow_writing_files=False ) ) optimizer.go()
optimizer = opt.ExtraTreesOptPro(iterations=10) optimizer.forge_experiment( model_initializer=RGFClassifier, model_init_params=dict( max_leaf=1000, algorithm=Categorical(['RGF', 'RGF_Opt', 'RGF_Sib']), l2=Real(0.01, 0.3), normalize=Categorical([True, False]), learning_rate=Real(0.3, 0.7), loss=Categorical(['LS', 'Expo', 'Log', 'Abs']) ) ) optimizer.go()
This is a simple illustration of the file structure you can expect your
Experiments to generate. For an in-depth description of the directory structure and the contents of the various files, see the File Structure Overview section in the documentation. However, the essentials are as follows:
Experimentadds a file to each HyperparameterHunterAssets/Experiments subdirectory, named by
Experimentalso adds an entry to HyperparameterHunterAssets/Leaderboards/GlobalLeaderboard.csv
do_full_savekwargs (documented here)
HyperparameterHunterAssets | Heartbeat.log | └───Experiments | | | └───Descriptions | | | <Files describing Experiment results, conditions, etc.>.json | | | └───Predictions<OOF/Holdout/Test> | | | <Files containing Experiment predictions for the indicated dataset>.csv | | | └───Heartbeats | | | <Files containing the log produced by the Experiment>.log | | | └───ScriptBackups | | <Files containing a copy of the script that created the Experiment>.py | └───Leaderboards | | GlobalLeaderboard.csv | | <Other leaderboards>.csv | └───TestedKeys | | <Files named by Environment key, containing hyperparameter keys>.json | └───KeyAttributeLookup | <Files linking complex objects used in Experiments to their hashes>
pip install hyperparameter-hunter
If you like being on the cutting-edge, and you want all the latest developments, run:
pip install git+https://github.com/HunterMcGushion/hyperparameter_hunter.git
If you want to contribute to HyperparameterHunter, get started here.
That's ok. Don't feel bad. It's a bit weird to wrap your head around. Here's an example that illustrates how everything is related:
from hyperparameter_hunter import Environment, CVExperiment, BayesianOptPro, Integer from hyperparameter_hunter.utils.learning_utils import get_breast_cancer_data from xgboost import XGBClassifier # Start by creating an `Environment` - This is where you define how Experiments (and optimization) will be conducted env = Environment( train_dataset=get_breast_cancer_data(target='target'), results_path='HyperparameterHunterAssets', metrics=['roc_auc_score'], cv_type='StratifiedKFold', cv_params=dict(n_splits=10, shuffle=True, random_state=32), ) # Now, conduct an `Experiment` # This tells HyperparameterHunter to use the settings in the active `Environment` to train a model with these hyperparameters experiment = CVExperiment( model_initializer=XGBClassifier, model_init_params=dict( objective='reg:linear', max_depth=3 ) ) # That's it. No annoying boilerplate code to fit models and record results # Now, the `Environment`'s `results_path` directory will contain new files describing the Experiment just conducted # Time for the fun part. We'll set up some hyperparameter optimization by first defining the `OptPro` (Optimization Protocol) we want optimizer = BayesianOptPro(verbose=1) # Now we're going to say which hyperparameters we want to optimize. # Notice how this looks just like our `experiment` above optimizer.forge_experiment( model_initializer=XGBClassifier, model_init_params=dict( objective='reg:linear', # We're setting this as a constant guideline - Not one to optimize max_depth=Integer(2, 10) # Instead of using an int like the `experiment` above, we provide a space to search ) ) # Notice that our range for `max_depth` includes the `max_depth=3` value we used in our `experiment` earlier optimizer.go() # Now, we go assert experiment.experiment_id in [_ for _ in optimizer.similar_experiments] # Here we're verifying that the `experiment` we conducted first was found by `optimizer` and used as learning material # You can also see via the console that we found `experiment`'s saved files, and used it to start optimization last_experiment_id = optimizer.current_experiment.experiment_id # Let's save the id of the experiment that was just conducted by `optimizer` optimizer.go() # Now, we'll start up `optimizer` again... # And we can see that this second optimization round learned from both our first `experiment` and our first optimization round assert experiment.experiment_id in [_ for _ in optimizer.similar_experiments] assert last_experiment_id in [_ for _ in optimizer.similar_experiments] # It even did all this without us having to tell it what experiments to learn from # Now think about how much better your hyperparameter optimization will be when it learns from: # - All your past experiments, and # - All your past optimization rounds # And the best part: HyperparameterHunter figures out which experiments are compatible all on its own # You don't have to worry about telling it that KFold=5 is different from KFold=10, # Or that max_depth=12 is outside of max_depth=Integer(2, 10)
These are some things that might "getcha"
CVExperimentbefore initializing your
Experimentfits within the search space defined by your
OptPro, the optimizer will locate and read in the results of the
Experimentafter you've done it once, as the results have been saved. Leaving it there will just execute the same
Experimentover and over again
Activationlayer, and providing a
Denselayer with the
Activationlayers, or provide
activationkwargs to other layers, and stick with it!
optimizer_paramsat the same time?
optimizersexpect different arguments
optimizer=Categorical(['adam', 'rmsprop']), there are two different possible dicts of
optimizer_paramsvalue. That way, each
optimizerwill use its default parameters
optimizerwas the best, and set
optimizer=<best optimizer>, then move on to tuning
optimizer_params, with arguments specific to the
__init__methods are defined somewhere else, and given placeholder values of
Nonein their signatures
Noneif you don’t explicitly provide a value for that argument