Microbial Rnaseq
Analysis of RNAseq data from (host-associated) microbial mixtures
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Ltrpred | 31 | 2 years ago | 6 | gpl-2.0 | R | |||||
| De novo annotation of young retrotransposons | ||||||||||
| Opqua | 16 | 5 months ago | 32 | November 17, 2022 | 1 | mit | Python | |||
| Epidemiological modeling framework for pathogen population genetics and evolution. | ||||||||||
| Virhostmatcher Net | 12 | 2 years ago | 1 | C++ | ||||||
| VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions. | ||||||||||
| Phagehosts | 11 | 3 years ago | mit | Python | ||||||
| This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FEMS Microbiology Reviews doi: 10.1093/femsre/fuv048 | ||||||||||
| Microbial Rnaseq | 10 | 5 years ago | Nextflow | |||||||
| Analysis of RNAseq data from (host-associated) microbial mixtures | ||||||||||
| Phirbo | 9 | 2 years ago | 1 | gpl-3.0 | Python | |||||
| Predict prokaryotic hosts for phage (meta) genomic sequences | ||||||||||
| Polyidus | 8 | a year ago | 2 | gpl-3.0 | Python | |||||
| Polyidus provides a framework to catch chimeric DNA sequences with a tale of python | ||||||||||
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