Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Getting Started With Genomics Tools And Resources | 991 | 2 months ago | 1 | Shell | ||||||
Unix, R and python tools for genomics and data science | ||||||||||
Maftools | 400 | 2 months ago | 17 | mit | R | |||||
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. | ||||||||||
Awesome Cancer Variant Databases | 284 | 5 months ago | 1 | mit | ||||||
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants. | ||||||||||
Pygeno | 242 | 1 | 4 years ago | 18 | December 15, 2021 | 5 | apache-2.0 | Python | ||
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs | ||||||||||
Somalier | 224 | 6 months ago | 42 | mit | Nim | |||||
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy" | ||||||||||
Genome Spy | 150 | 3 | 2 months ago | 41 | November 24, 2023 | 66 | mit | JavaScript | ||
A visualization grammar and GPU-accelerated toolkit for genomic data | ||||||||||
Sigprofilerextractor | 132 | 3 | 4 months ago | 50 | November 21, 2023 | 1 | bsd-2-clause | Python | ||
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
Msisensor | 99 | 3 years ago | 11 | mit | C++ | |||||
microsatellite instability detection using tumor only or paired tumor-normal data | ||||||||||
Sigprofilermatrixgenerator | 91 | 1 | 10 | 3 months ago | 102 | October 02, 2023 | 5 | bsd-2-clause | Python | |
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. | ||||||||||
Palimpsest | 56 | 3 years ago | 23 | R | ||||||
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer. |