| crazyhottommy/getting-started-with-genomics-tools-and-resources |
991 |
|
0 |
0 |
over 2 years ago |
0 |
|
1 |
|
Shell |
| Unix, R and python tools for genomics and data science |
| PoisonAlien/maftools |
400 |
|
0 |
0 |
over 2 years ago |
0 |
|
17 |
mit |
R |
| Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. |
| seandavi/awesome-cancer-variant-databases |
284 |
|
0 |
0 |
over 2 years ago |
0 |
|
1 |
mit |
|
| A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants. |
| tariqdaouda/pyGeno |
242 |
|
1 |
0 |
about 6 years ago |
18 |
December 15, 2021 |
5 |
apache-2.0 |
Python |
| Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs |
| brentp/somalier |
224 |
|
0 |
0 |
over 2 years ago |
0 |
|
42 |
mit |
Nim |
| fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy" |
| genome-spy/genome-spy |
150 |
|
3 |
5 |
over 2 years ago |
92 |
February 12, 2026 |
66 |
mit |
JavaScript |
| A visualization grammar and GPU-accelerated toolkit for genomic data |
| AlexandrovLab/SigProfilerExtractor |
132 |
|
0 |
3 |
over 2 years ago |
50 |
November 21, 2023 |
1 |
bsd-2-clause |
Python |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. |
| ding-lab/msisensor |
99 |
|
0 |
0 |
over 5 years ago |
0 |
|
11 |
mit |
C++ |
| microsatellite instability detection using tumor only or paired tumor-normal data |
| AlexandrovLab/SigProfilerMatrixGenerator |
91 |
|
1 |
10 |
over 2 years ago |
102 |
October 02, 2023 |
5 |
bsd-2-clause |
Python |
| SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. |
| FunGeST/Palimpsest |
56 |
|
0 |
0 |
about 5 years ago |
0 |
|
23 |
|
R |
| An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer. |
