Sigprofilerclusters

Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
Alternatives To Sigprofilerclusters
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Getting Started With Genomics Tools And Resources991
2 months ago1Shell
Unix, R and python tools for genomics and data science
Maftools400
2 months ago17mitR
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Awesome Cancer Variant Databases284
5 months ago1mit
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Pygeno242
14 years ago18December 15, 20215apache-2.0Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Somalier224
6 months ago42mitNim
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Genome Spy15032 months ago41November 24, 202366mitJavaScript
A visualization grammar and GPU-accelerated toolkit for genomic data
Sigprofilerextractor13234 months ago50November 21, 20231bsd-2-clausePython
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Msisensor99
3 years ago11mitC++
microsatellite instability detection using tumor only or paired tumor-normal data
Sigprofilermatrixgenerator911103 months ago102October 02, 20235bsd-2-clausePython
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Palimpsest56
3 years ago23R
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Alternatives To Sigprofilerclusters
Select To Compare


Alternative Project Comparisons
Popular Bioinformatics Projects
Popular Cancer Genomics Projects
Popular Data Processing Categories
Related Searches

Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Python
Bioinformatics
Cancer Genomics