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Search results for sequencing virus
sequencing
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virus
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15 search results found
Serratus
⭐
219
Ultra-deep search for novel viruses
Nextclade
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190
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Fastv
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56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Virtool
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41
Viral infection diagnostics using next-generation sequencing
Iva
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37
de novo virus assembler of Illumina paired reads
Uniquekmer
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33
Generate unique KMERs for every contig in a FASTA file
Varvamp
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15
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Zika Seq
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12
Pipelines to do MinION sequencing of Zika virus
Diversitools
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10
Tool for analysing viral diversity from High Throughput Sequencing
Polyidus
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8
Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
Ont Analysis Toolkit
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6
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
Decontaminer
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5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
Discvr
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5
A Viral detection tool from High-Throughput Sequencing (HTS) data
Kodoja
⭐
5
Kodoja: identifying viruses from plant RNA sequencing data
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1-15 of 15 search results
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