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Search results for vcf variant calling

variant-calling x

10 search results found

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Paragraph ⭐ 140

Graph realignment tools for structural variants

Tiledb Vcf ⭐ 79

Efficient variant-call data storage and retrieval library using the TileDB storage library.

vcfdist: Accurately benchmarking phased variant calls

Indelope ⭐ 39

find large indels (in the blind spot between GATK/freebayes and SV callers)

Population-wide Deletion Calling

A tool for fast and accurate summarizing of variant calling format (VCF) files

Germline Dna ⭐ 23

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

Sentieon Dnascope Ml ⭐ 7

Sentieon DNAscope + Machine Learning Model

Novocaller ⭐ 6

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