Cerebra
A tool for fast and accurate summarizing of variant calling format (VCF) files
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Vg | 1,022 | 3 months ago | 760 | other | C++ | |||||
| tools for working with genome variation graphs | ||||||||||
| Hail | 905 |  | 17 | 3 months ago | 146 | October 30, 2023 | 211 | mit | Python | |
| Cloud-native genomic dataframes and batch computing | ||||||||||
| Nucleus | 675 |  | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | |
| Python and C++ code for reading and writing genomics data. | ||||||||||
| Snippy | 408 | 6 months ago | 179 | gpl-2.0 | Perl | |||||
| :scissors: :zap: Rapid haploid variant calling and core genome alignment | ||||||||||
| Cyvcf2 | 345 |  | 34 | 46 | 3 months ago | 90 | December 11, 2023 | 39 | mit | Cython |
| cython + htslib == fast VCF and BCF processing | ||||||||||
| Vcfanno | 334 | 1 | 5 months ago | 41 | November 29, 2022 | 33 | mit | Go | ||
| annotate a VCF with other VCFs/BEDs/tabixed files | ||||||||||
| Truvari | 284 | 10 days ago | 23 | August 07, 2023 | mit | Python | ||||
| Structural variant toolkit for VCFs | ||||||||||
| Hap.py | 283 | 2 years ago | 80 | other | C++ | |||||
| Haplotype VCF comparison tools | ||||||||||
| Htsjdk | 271 | 170 | 87 | 4 months ago | 78 | October 13, 2023 | 303 | Java | ||
| A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
| Rtg Tools | 260 | 3 months ago | bsd-2-clause | Java | ||||||
| RTG Tools: Utilities for accurate VCF comparison and manipulation | ||||||||||
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Python
Genomics
Vcf