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Search results for scrna seq spatial transcriptomics

spatial-transcriptomics x

7 search results found

Bulk2space ⭐ 68

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

Interactive software tool for the assignment of cell types in single-cell studies.

Accurate and fast cell marker gene identification with COSG

Scpca Nf ⭐ 11

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references

Cellscopes.jl ⭐ 9

A Julia package for single cell and spatial data analysis

St_analysis ⭐ 8

A toolset for analysis and visualisation of Spatial Transcriptomics datasets.

St_pipeline ⭐ 6

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

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