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Search results for r spatial transcriptomics

spatial-transcriptomics x

14 search results found

Cellchat ⭐ 76

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Singlecellhaystack ⭐ 68

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

From geospatial to spatial -omics

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

Meringue ⭐ 33

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

Multiview Intercellular SpaTial modeling framework

Accurate and fast cell marker gene identification with COSG

Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data

Pipeline for SpatialTranscriptomics and 10X Visium data

Scpca Nf ⭐ 11

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

Spotclean ⭐ 11

R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data

ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods

Suite of analysis tools for spatial total RNA-sequencing

Novosparc ⭐ 6

Reconstruction of spatial context of gene expression with optimal transport

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