Awesome Open Source

Programming Languages

Search results for single cell spatial transcriptomics

spatial-transcriptomics x

14 search results found

DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis

Decoupler Py ⭐ 112

Python package to perform enrichment analysis from omics data.

Singlecellhaystack ⭐ 68

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Spatial-Linked Alignment Tool

Spicemix ⭐ 41

spatial transcriptome, single cell

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

Spatialtranscriptomics ⭐ 34

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Meringue ⭐ 33

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

Interactive software tool for the assignment of cell types in single-cell studies.

WebGL-based viewer for spatially-resolved transcriptomics data

Accurate and fast cell marker gene identification with COSG

A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

Singlecellhaystack Py ⭐ 8

Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).

Novosparc ⭐ 6

Reconstruction of spatial context of gene expression with optimal transport

Singlecellnotes ⭐ 5

Links to interesting courses, tutorials, papers, software etc. related to single-cell omics data analysis

Related Searches

R Single Cell (163)

Python Single Cell (125)

Rna Seq Single Cell (78)

Bioinformatics Single Cell (70)

Jupyter Notebook Single Cell (68)

Single Cell Scrna Seq (46)

Genomics Single Cell (38)

Single Cell Transcriptomics (28)

Python Spatial Transcriptomics (23)

Jupyter Notebook Spatial Transcriptomics (16)

1-14 of 14 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.