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Spatialtranscriptomics

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Stars
34
License
mit
Open Issues
7
Most Recent Commit
5 months ago
Programming Language
Nextflow
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Pytorch Toolbelt ⭐ 1,458
PyTorch extensions for fast R&D prototyping and Kaggle farming
dependent packages 6total releases 27most recent commit 5 months agopypi pytorch-toolbelt} Downloads
Image_processing ⭐ 794
High-level image processing wrapper for libvips and ImageMagick/GraphicsMagick
dependent packages 55total releases 44most recent commit 9 months agorubygems image_processing} Downloads
Openisp ⭐ 633
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most recent commit a year ago


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Alternative Project Comparisons
Spatialtranscriptomics vs Towhee
Spatialtranscriptomics vs Pytorch Toolbelt
Spatialtranscriptomics vs Image_processing
Spatialtranscriptomics vs Openisp
Spatialtranscriptomics vs Image_pipeline
Spatialtranscriptomics vs Livekeys
Spatialtranscriptomics vs S2p
Spatialtranscriptomics vs Steppy
Spatialtranscriptomics vs Augmentor.jl
Spatialtranscriptomics vs Open Solution Salt Identification
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