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Search results for jupyter notebook spatial transcriptomics

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10 search results found

Bulk2space ⭐ 68

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

Spicemix ⭐ 41

spatial transcriptome, single cell

Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA

Accurate and fast cell marker gene identification with COSG

Clustermap ⭐ 18

ClusterMap for multi-scale clustering analysis of spatial gene expression

Spatialdm ⭐ 16

Spatial direct messaging detected by bivariate Moran

Chrysalis ⭐ 13

Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.

Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper

MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states for spatially resolved transcriptomics data.

Dependency-aware deep generative models for multitasking analysis of spatial genomics data

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