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Search results for genomics single cell

24 search results found

Awesome Omics ⭐ 536

A collection of awesome things regarding all omics.

Scrna Seq_notes ⭐ 478

A list of scRNA-seq analysis tools

Octopus ⭐ 285

Bayesian haplotype-based mutation calling

Scrnaseq ⭐ 119

A single-cell RNAseq pipeline for 10X genomics data

mgatk: mitochondrial genome analysis toolkit

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

Cut Runtools 2.0 ⭐ 62

CUT&RUN and CUT&Tag data processing and analysis

Deep learning for single-cell transcript counts

Magma_celltyping ⭐ 50

Find causal cell-types underlying complex trait genetics

Sscclust ⭐ 32

simpler single cell RNAseq data clustering

Interactive software tool for the assignment of cell types in single-cell studies.

Gcmodeller ⭐ 27

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Netsmooth ⭐ 18

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Muto_wilson_ncomm_2020 ⭐ 17

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

Switchde ⭐ 15

Inference of switch-like differential expression along single-cell trajectories

Omicssuite.github.io ⭐ 15

OmicsSuite website for releasing new version.

Dropclust ⭐ 15

Version 2.1.0 released

Cellrangerrkit ⭐ 14

Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)

Mdmcleaner ⭐ 13

MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs

Clustassess ⭐ 13

Tools for assessing clustering robustness

SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer

Materials used during #NGSchool2017

Single Cell Experiments ⭐ 7

Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark

NvTK (NvwaToolKit), is a systemmatic and easy-using deep learning software in single-cell genomics.

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

Genocraft ⭐ 5

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

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