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Search results for bioinformatics spatial transcriptomics
bioinformatics
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spatial-transcriptomics
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12 search results found
Dance
⭐
284
DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis
Decoupler Py
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112
Python package to perform enrichment analysis from omics data.
Singlecellhaystack
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68
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
Slat
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52
Spatial-Linked Alignment Tool
Spatialtranscriptomics
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34
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Clustermap
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18
ClusterMap for multi-scale clustering analysis of spatial gene expression
Splotch
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17
Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
Holonet
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14
HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shaping cellular phenotypes
Chrysalis
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13
Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
Oligo Designer Toolsuite
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12
Develop custom oligo design pipelines.
Cellscopes.jl
⭐
9
A Julia package for single cell and spatial data analysis
Singlecellhaystack Py
⭐
8
Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).
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1-12 of 12 search results
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